Sedimentibacter sp. MB35-C1: RBQ61_13690
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Entry
RBQ61_13690 CDS
T10438
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03020
RNA polymerase
Brite
Enzymes [BR:
sedm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBQ61_13690 (rpoC)
Transcription machinery [BR:
sedm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBQ61_13690 (rpoC)
DNA repair and recombination proteins [BR:
sedm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBQ61_13690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WMJ79030
UniProt:
A0AA51DD37
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All DBs
Position
complement(2813763..2817281)
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AA seq
1172 aa
AA seq
DB search
MIDYNNFESIRIGLASPDKIRQWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFAQYVVTEAGDTSLSEKQLLTEMEYREYKDHYKNAFKAEMGAEAIKKLLE
KIDLENEAAELKSQLKDSKGQKKIRITRRLEVIEAFRISGNRPEWMILDAVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFNQCGLPKK
MALELFKPFVMKKLVENGTAHNIKSAKKKVEKVDTAVWDVLDEIIKDHTVMLNRAPTLHR
LGIQSFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAESRFLMMSTNNIL
APKDGRPITTPTQDMVLGSYYMTLEIENSKGHGMVFKDYDEMMLAYFNQNIDLHARIKLR
KTIDGETRFVESTAGRFIFNENIPQNLGFVDREKDKFSLEIDKTVTKKHLEEIIYRCFRK
YGNSKTADVLDGIKSKGYKYSTKGAITISVSDITVPEKKKELIEKAEKQVIEYEKKYRRG
LMTDEERYENVIKIWNQTTEDVTEALMSNLDPLNSIYIMSVSGARGGRNQIKQLAGMRGL
MASATGKTVEVPVKSNFREGLTVLEFFLSATGARKGLTDTALRTADSGYLTRRLVDVSQD
VIVREVDCGTTDGIEVEAFVDGKEVIEELSERCADRYASDDIINPETGEIMVKSGGFISE
ETAHKIQDSGIKKVKVRSVLTCKTPHGVCAKCYGTNLATGKLVNVGGAVGIIAAQSIGEP
GTQLTMRTFHTGGIAAASDITQGLPRIEELFEARKPKGQAIISEIPGRVTLTEKIHKREV
TITNNESMESKTYLIPYGSKVLVSEGDHLEAGDKITEGSVNPHDIMNIKGMKALESYILM
EVQRVYRMQGVDISDKHVEVIVRQMVNKVRIEDSGDTSLLPGSLVSSFEFKEQNDKAIEE
GKEPAVGEVALLGITKSSLATDSFLASASFQETTRVLTDAATKGKVDSLIGLKENVIIGK
LIPAGTGMKKYRNIGVTTKDVEIEEKEEPVNE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
ttgatagattacaataatttcgaatcaataagaattggcttggcatctccggataaaatc
agacaatggtctagaggagaagttaaaaaaccagaaacaataaattatcgtacattaaag
ccagagaaagacggtcttttctgtgaaaaaatatttggacctactaaagactgggaatgt
cattgcggaaagtataaaagagtaagatataaaggtgttgtttgtgaccgatgcggagtt
gaggttacaaaagcaaaggtaagaagagaaagaatggggcacattgagcttgctgccccg
gtatctcacatatggtattttaaaggtataccatctagaatgggattaattctagatatg
tctccaagagcgttggaaaaagttttgtattttgcacaatatgttgttactgaagcaggt
gacacttctttgtctgaaaaacagcttttgacagaaatggagtacagagaatataaagac
cattataaaaatgcttttaaggcagagatgggtgcggaagcaataaaaaaacttcttgaa
aaaatagaccttgaaaatgaagctgccgagcttaaaagtcagctgaaggatagcaaagga
cagaaaaaaataagaataacaagaagattggaagtcattgaagcttttagaatttcaggc
aacagaccggaatggatgattttagatgctgtacctgttattcctccggaattaagaccg
atggttcaacttgacggtgggcgttttgctacatcagacttaaacgatctttacagaaga
gttataaacagaaacaacagattgaagaggcttcttgatttaggagcacctgacataata
gtaagaaatgaaaaaaggatgttacaggaagctgttgacgcattaatagataatggaaga
agaggaagacctgtaacaggcccaggaaacagaccattaaaatctctgtcagatatgctt
aaaggaaagcaagggcgttttagacaaaacctactgggaaagagagttgactattcaggc
cgttcggttatagttgtcggtcctgagcttaaatttaaccagtgcggccttccgaaaaag
atggctcttgagcttttcaagccgtttgttatgaagaaacttgttgagaatggaacggca
cacaatattaaaagcgcaaagaaaaaagttgaaaaggtggatactgcagtatgggacgta
ttagatgaaataatcaaagaccatacggtaatgcttaaccgtgcacctacgcttcacaga
cttggaattcagtcatttgagcctgtgcttgttgaaggaaaagctatcaagctgcaccct
ttggtatgtacggcatacaatgccgactttgacggagaccagatggcggtacacgttcct
ttatcggtagaagcgcaggcagaatcaagatttttgatgatgtcaacaaacaatattttg
gctccaaaagacggaagacctattaccacacctacacaggatatggttcttggaagctac
tacatgaccttggaaatagaaaactcaaagggacatggaatggtttttaaagactatgat
gaaatgatgttggcatatttcaatcaaaacattgatttgcatgccagaataaagctgaga
aagacaatagacggagaaaccaggtttgttgaaagtactgcaggaaggtttatatttaac
gaaaatattcctcagaatctaggctttgttgacagagaaaaagacaaattctcacttgaa
attgataaaacagttacgaaaaaacatcttgaggaaataatatacagatgttttagaaaa
tacggcaactcaaaaacagctgacgtattggatggaataaagtcaaaaggctataaatat
tccacaaagggagcaataacaataagtgtcagcgacataactgttcctgaaaaaaagaaa
gaacttattgaaaaagctgaaaaacaggttatcgaatatgaaaagaagtacagaagaggt
ttgatgaccgatgaagaaagatacgaaaatgtaattaagatttggaatcagacaactgaa
gatgttacagaggcgttgatgagtaacttggaccctctaaattctatttatatcatgtca
gtatccggagcccgtggaggccgtaaccagataaaacagctggcaggtatgcgtggactt
atggcgagtgccacaggtaagacagttgaggttccggttaagtcaaacttccgagaagga
cttacagttcttgaattcttcctttcagctacaggagctcgaaaaggattaacagatacg
gctcttagaacagcagactcaggttatttaacaagaaggcttgtagatgtaagccaggat
gttattgtaagagaagttgattgtggtacaacagacggaattgaagttgaagcttttgtt
gacggtaaagaagtgatagaagaattaagtgaaagatgtgcagacagatatgcttctgac
gatattataaaccctgaaacaggtgaaataatggtgaaatccggaggatttatttccgaa
gaaactgcacataaaattcaggattcaggtataaaaaaggttaaagtaagatccgttttg
acgtgcaagactcctcatggggtgtgtgcaaaatgctatggtaccaaccttgctacagga
aagcttgttaatgttggaggagcagttggaatcattgctgctcagtcaattggcgagcct
ggtacacagcttacaatgcgtacgttccataccggcggtattgctgcggcaagtgatata
actcaaggtttgcctcgtatagaggagctttttgaagcaagaaagccgaaaggccaggca
ataatttcagaaattcctggtagagttacattaacggaaaaaattcataaaagagaagtt
acaattacaaacaacgaatctatggaaagcaagacatatttgataccttatgggtcaaag
gtacttgtttccgagggggatcacctagaagccggagataagattacggaaggttcagtt
aatcctcatgatattatgaacataaaaggaatgaaagcccttgaatcgtatattcttatg
gaggttcaaagggtttacagaatgcagggtgttgacataagcgataagcatgttgaagta
atagtaagacagatggtaaataaagttcgaattgaggattcgggcgatactagtcttctt
cctggcagtctggtgtcatcatttgagtttaaagaacagaatgataaagccattgaagaa
ggaaaagagcctgctgttggtgaggttgcattgcttggtattacaaagtcatcacttgcc
acggattcattccttgcatctgcatcattccaggagacaacaagagtattaacagatgcc
gctacaaagggaaaagttgatagtttgattggacttaaagaaaatgtcattataggtaaa
cttataccggcgggaacaggaatgaagaaatacagaaatattggagtaaccactaaagat
gttgaaatagaagaaaaagaagaacctgttaatgagtaa
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