Sedimentibacter sp. MB35-C1: RBQ61_14735
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Entry
RBQ61_14735 CDS
T10438
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03030
DNA replication
sedm03430
Mismatch repair
sedm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBQ61_14735
03430 Mismatch repair
RBQ61_14735
03440 Homologous recombination
RBQ61_14735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedm03032
]
RBQ61_14735
03400 DNA repair and recombination proteins [BR:
sedm03400
]
RBQ61_14735
Enzymes [BR:
sedm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBQ61_14735
DNA replication proteins [BR:
sedm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBQ61_14735
DNA repair and recombination proteins [BR:
sedm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBQ61_14735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
WMJ76815
LinkDB
All DBs
Position
complement(3029175..3032654)
Genome browser
AA seq
1159 aa
AA seq
DB search
MNNNFTHLHVHTEYSLLDGACRIKELVNKAKELNMSSLAITDHGVMYGVVEFFKQAKKAG
IKPILGFEAYVSPRRLTDKDPQRDKNQFHLVLLAENEEGWKNIIKLCSIGFVDGYYYKPR
IDHDTIRKYSSGVIALSACLAGEVQSHILDNNYAEALNTALMYEDIFGKDNFFLEMQDHG
MKEQQTVNKELVRISRETGIKLVATNDVHYVNKEDAYFHDVLLCIQMQKTVMDDDRMQFP
SDEFYLKSYEEMLELFPEDALKNTMDIAERCNVELDFDTVHLPEFEIPEGHTKSEYFREI
CQNGLIDRYNKIDSELQKRLDYEISVIEQMGYVDYFLIVWDFIKYAKDNKIMVGPGRGSA
AGSLVAYSMKITNIDPMKHNLIFERFLNPDRVSMPDIDVDFCYERREEVIEYVRNKYGEE
RVAQIITFGTMAARGSIRDVGRALDMSYGEVDFVAKKIPMSLGMTISKALEVNKELNDLY
EGDSKVKKLIDLALKVEGLPRHASTHAAGVLISKEDVTEYVPLSRNKDVITTQFNMIELE
ELGLLKMDFLGLRTLTVIRDAIELIESNHHVKVDFSNCKYDDSKVYKMFANAETLGIFQF
ESSGMRAFLGELKPTEFENLSAANALYRPGPMGQIPVYIKNKLNPENVTYLHPKLEPILN
VTYGCMVYQEQVMQIVRDIGGFTMGRSDLLRRAMGKKKMSVMLEERKNFIYGKEAENGEA
AILGAVNNGVDEKTANDIYDLMVEFAKYAFPKAHSVAYAALAYETAYLKYYYPVEFMAAL
ISSIMGSSGTVSLYIRECKRLGIQILPPDVNESRDKFTVEGGKIRFGLSAVKNVGTNVIA
EVIKVRESKGKFKSFTDFCKKVDQSVLNKRQIESLIKCGAFDFLGIKRAQLMAVYERIID
DVVNQKKKNIEGQFSLFDEISPGSMEMDRDDIPDMQEYNEKVLLAMEKEMLGIYLSGNPL
SEYEKELEKSATTNTNEISEIRESGENSRLSDGSRISIGGIIIKKQNKITKNNNMMAFIT
LEDLYGTVEGIIFPKIYESCKDILYEDNIVMVEGTIDASEEEAPKLICNKVYEIRKIDTG
KTSSKKLYLKVENKEHYKKIKKDLFSSICKYPGSDCVIIYNHQERANMVMPVKNWVDANN
RELIAFLKVMFGEGNIVIK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataattttacacatttacatgtacatactgaatacagcctgctggacggagcg
tgcaggattaaagagctagtaaataaagcgaaggagctcaacatgtcttcattggcaatt
acggatcatggagtcatgtacggagttgtggagttttttaagcaggcaaaaaaagcggga
attaaacctatacttggatttgaagcatatgtttcaccaagaaggcttactgacaaggat
cctcaaagggataaaaatcagttccatttagtgttgcttgcagagaatgaagaaggatgg
aaaaatattataaagctttgttcaataggatttgtagacggttattactacaaacccaga
attgatcatgatacaatcagaaaatatagcagtggtgtaattgcactgagtgcatgcctt
gctggagaggtgcaatcgcatattcttgacaacaattatgctgaggcattaaatacagca
ctgatgtacgaggacatttttggaaaagataacttctttcttgaaatgcaggatcatgga
atgaaagagcagcaaaccgtgaacaaggagcttgtcaggatcagtcgtgaaactggtatc
aaacttgtggctacaaatgatgttcattatgtaaacaaggaagatgcatatttccatgat
gtactcttgtgcatacaaatgcaaaaaacagttatggatgatgacagaatgcagtttcct
tcggatgaattttatcttaaatcttatgaagaaatgctggagttgtttccggaggatgcg
cttaagaatacgatggatatagctgagcggtgcaatgttgaactggattttgacactgta
catcttccggaatttgagattccagaaggacatacaaaatcagaatatttcagggaaata
tgtcaaaatggtttaatagaccgatataacaaaattgatagcgaacttcaaaaaaggctt
gattacgaaataagcgtaattgagcaaatgggttatgttgattacttccttattgtatgg
gatttcataaaatatgccaaggacaataaaataatggtggggcctggaagaggttcggct
gccggaagtttagtggcatattcaatgaaaattacaaatattgatccaatgaaacataat
ttgattttcgaaaggtttcttaacccggatcgtgttagcatgccggatattgatgttgat
ttttgctatgaaagacgtgaagaagtaatagagtatgtcagaaataaatacggtgaggaa
agggtagcacaaattataacattcggaacaatggcagccagaggatcaatcagagatgtt
ggaagggctctggatatgtcttatggtgaagttgattttgtcgcaaagaaaataccaatg
agccttggaatgactatttcaaaagctcttgaagtaaataaggaattgaatgacttatat
gaaggagattcgaaggttaagaaacttattgaccttgctcttaaggtagaaggacttccc
agacatgcttcaacccatgctgcaggagttttgatatctaaggaggatgttaccgaatat
gtacctctttcaagaaacaaagatgtaataacaactcaatttaacatgatagaactggag
gagcttggacttttaaagatggactttttgggtttgaggactctgactgtaatacgtgat
gcgattgagcttattgaaagtaaccatcatgtaaaggtggatttcagtaattgcaagtat
gatgacagcaaggtttacaaaatgtttgctaatgcggaaacattgggaatatttcagttt
gaaagctcaggaatgagggcgtttttaggcgagttgaaaccaacagaatttgaaaacctg
tcagcagcaaatgctctgtaccggcctgggcctatggggcagattcccgtatacataaag
aacaagcttaatcctgaaaatgtaacttatcttcatccaaaacttgaacccatattaaat
gttacatacggctgcatggtttatcaagaacaagtaatgcagatagtgagagacataggc
ggttttacaatgggacgttccgacttgttgagacgtgccatgggtaaaaagaaaatgagt
gttatgcttgaagaaagaaaaaactttatatatggaaaagaagctgaaaatggtgaggcg
gcgattcttggtgctgttaacaacggggtggacgagaaaacagccaatgacatttatgat
ttgatggttgaatttgcaaaatatgcgtttccaaaggcacattctgttgcgtatgcagca
ttggcatatgaaactgcttacttgaagtattattatcccgttgaatttatggcagcactt
atttcaagcattatgggcagctcgggaacagtatcgttgtatataagagaatgtaagaga
ctgggaatacaaatcttgcctcctgatgtaaatgaaagtagggacaaatttactgttgaa
ggaggaaaaatacgttttggcctttctgctgtcaaaaatgtaggaacaaatgtaattgcc
gaagttattaaagtaagagagtcaaaggggaaatttaagagttttactgatttctgcaaa
aaggttgatcagagtgtattgaataaaagacagattgaatcattgattaaatgtggcgca
tttgattttttgggaattaagcgtgcccagcttatggcggtttatgaaaggataattgat
gatgtagttaaccaaaagaagaaaaatatagagggccaattctcattgtttgatgaaatt
tcgccgggaagtatggaaatggacagagatgatatacctgatatgcaggaatataatgaa
aaagtgcttcttgccatggaaaaggaaatgcttggcatatacttaagcggtaacccgctg
tcggaatatgaaaaggagcttgaaaaatcagctacaactaataccaatgaaatatcagaa
ataagagaatccggtgaaaatagcagactctcagatggaagtaggatttcaataggcgga
ataattataaaaaaacaaaataaaataactaaaaacaataacatgatggcatttataact
ttagaggatttatacggaacagtggagggcataatttttcctaagatttacgaaagctgc
aaggatattttatacgaggacaatattgtaatggtagaaggaacaatagatgcatcggaa
gaagaagctccaaagcttatatgcaataaggtctacgaaatcagaaaaattgatacaggt
aaaacttcatcaaagaagctgtatttgaaggttgaaaacaaggagcactataagaaaata
aaaaaagatctttttagcagtatatgcaaatatccgggaagcgactgcgttataatatat
aatcaccaggaaagagccaatatggttatgcctgtaaagaattgggtggatgctaacaac
agagaactaattgcttttctcaaggtaatgtttggtgaaggcaatattgtaataaagtaa
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