Sedimentibacter sp. MB35-C1: RBQ61_17405
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Entry
RBQ61_17405 CDS
T10438
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03420
Nucleotide excision repair
sedm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBQ61_17405
03430 Mismatch repair
RBQ61_17405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedm03400
]
RBQ61_17405
Enzymes [BR:
sedm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBQ61_17405
DNA repair and recombination proteins [BR:
sedm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBQ61_17405
MMR (mismatch excision repair)
Other MMR factors
RBQ61_17405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
NACHT
ResIII
AAA_22
NTPase_1
Imm63
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WMJ77319
UniProt:
A0AA51H857
LinkDB
All DBs
Position
complement(3580329..3582089)
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AA seq
586 aa
AA seq
DB search
MTLEEIIREKHSGDEDQLEFIFSDDKKIIVTAPAGCGKTTAMVSKIARELSTGHIPANKK
VLAMTFSVNAAMKIKDSLKTLLPDFVENTEKYISKVDIANYHNFAMRLLFKHGYSLNPEF
SNLFEFKVVDDSSHVLDAFIIGSDSDKLKALDDAVKKSNKDNLMNALDDYWDILNKKLIT
NHVITYNGILVSAIKLLCKRQVSSFYKEYYQMIIVDEFQDTNLLGYLLIKKLIGDNIVVF
LGDDVQKIYGFLGAINGIFSMFIKSYPAVEIEFHSNYRFRNNERMKNLDSLIRDYSENYG
PSKLKASVLLKNLDSDEEEDEFIVEGINRMISNLDDKVAVLVRAGWQGNSIVTKLDQKGI
KYFNALFRETDPEYLKFYSIAIEEFHNTTSGRAVQRDLQKCLDAVKSREHEIYQQNDKKF
IFDAMYKLLEVLFNESRNWEGTSKDKYDNIDFTLGNNGLKHMMEFIDESVVLTSIHSAKG
LEWEYVIIPKLNGFAFPSSYVCRPCRNVYSCNSGFDYCEFLYEETMEKAFKEEISVLYVA
VTRAKKDVFMTVNTGINHWNHTKQTSCLLNLKGLSTEDYDWEDVFE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacattagaagagataataagagaaaaacattctggtgatgaagaccaactagaattt
atcttttcagatgataaaaagataattgtaacagctccagctggatgtggtaaaacaaca
gctatggtaagtaaaattgcaagagaattaagtactggacatatacccgctaataagaaa
gtactcgctatgacctttagcgttaatgcagcaatgaaaataaaagattcacttaagaca
ttattgcctgattttgttgagaatacagaaaaatacatatctaaagtagatattgctaat
tatcataactttgctatgagattactttttaagcatggatattctcttaatccagagttc
tcgaatttgtttgaatttaaagtcgtagatgatagtagccacgtgctcgatgcttttatt
attggttctgacagtgataaattaaaggctttagatgatgctgttaaaaagtctaataaa
gataatctaatgaatgctttagatgattattgggatatactaaacaaaaaattaatcaca
aaccatgttataacatataatggaattttggtatcggctataaaactactttgtaagcgg
caagtttcgtccttctataaagaatattatcagatgattattgtcgatgagttccaagac
acaaaccttcttggatatttacttattaagaaattgattggtgataatattgttgttttt
ttaggagatgatgttcaaaaaatatatggttttttaggagctattaatggaattttcagt
atgtttataaagtcctatcctgccgtagagatagaatttcatagtaattacagatttaga
aataatgaaagaatgaaaaatctggacagtcttattagagattattctgaaaattatggt
ccatctaaattaaaagcgtcggttcttttgaaaaatttagatagtgacgaagaggaagat
gaattcattgttgaaggaattaacaggatgatttctaatttagatgataaagtggcagta
ttggttcgcgctggttggcaaggaaattcaattgttacaaaactagatcaaaaaggaatt
aagtattttaatgcattgtttagagagacagatcctgaatatttaaaattttatagtata
gcaattgaagaattccataatacaacatcaggaagagccgttcaaagagatttgcaaaaa
tgtcttgatgctgtaaaaagtagagagcatgagatataccagcaaaacgataagaaattt
atttttgacgcaatgtacaaattattagaggtgcttttcaatgaatctagaaactgggaa
ggaacttcaaaagataaatacgacaatatcgatttcacacttggcaataacggattaaag
catatgatggagtttatagatgaatctgtagtattgacatcaatacattcagcaaaaggg
cttgaatgggaatatgttattattccaaaattaaatggttttgcatttcctagttcttat
gtatgtagaccatgccgaaatgtttatagttgcaacagtggatttgattattgtgaattt
ttgtacgaagaaacaatggaaaaagcatttaaagaagaaataagtgttttgtatgtcgca
gttacgagagcgaagaaagacgtttttatgacagtaaatacgggaataaatcattggaat
catacaaaacaaactagctgtctacttaatttaaaaggactatcaacagaagattatgat
tgggaggatgtatttgaatag
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