Sedimenticola thiotaurini: AAY24_02005
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Entry
AAY24_02005 CDS
T03943
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
seds
Sedimenticola thiotaurini
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seds03016
]
AAY24_02005
Enzymes [BR:
seds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AAY24_02005
Transfer RNA biogenesis [BR:
seds03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AAY24_02005
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKH19321
UniProt:
A0A0F7JS75
LinkDB
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Position
461833..463653
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AA seq
606 aa
AA seq
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MSVFRAAAGSLALYKIRPARVVQVSDKIDIDLGGGKSKRVRPKDIVILHPGPLERLEDLV
EPAGELTEAWELLNGEETNLEELASLIYGEFTPASAWATWTRVAEGLYFEGSPEQIRARS
PEQVAADQQEREAKAAAEQAWNQFIARLERGAIESEDRERLVEVEKLALGLSENSRILQL
LGHQETPVNAHRMLVGVGYWPEEHNPYPHRQQVTCEDPRLGLPPLPEESREDLTGLPAFA
IDDEGSEDPDDAISLEGDRLWVHVADVAALIPPDSDIDQEARSRGANLYLPERIVHMLPP
QATQVLALGLQPVSPALSIGMRLDEAARISDVKVCKSLVRVTRHSYGEINQRMDSAPFAA
IKALTDRFRARRLADGATSIDLPEASVRVRDGQVCIRPLARMASRDMVTEAMVMAGEAIA
NYALSQNIPVPFAIQPAPDKVETPEGLAAMYAYRRKMKPSRSSTQEGVHAGLGLTCYTRT
TSPLRRYLDLVVHQQLRAHLDGRELLSFKQVGERIAAVEPLNGAIRRAERLSNTHWKLIH
LKRNPTWQGEAVVVEMENNRATLLIPELAMETKLRVRQDLKLDSRLSVALREVDVEDQVV
WFRPLG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttttcagagcagcagcaggtagtttggcactctacaagattcgtcccgcccgg
gtggtccaggtcagcgacaagatcgatattgacctgggaggtggcaagagcaagcgggta
cgccccaaggatatcgtgattctgcatccgggcccgctggagcggctcgaggatctggtg
gaaccggcgggtgagctgaccgaggcctgggagctgctgaatggcgaggagaccaacctg
gaggagctggcatcgctcatttatggcgaatttacaccggccagcgcctgggcgacctgg
acacgggtggcggaagggctctatttcgaaggaagtccggagcagatccgcgcccgcagc
ccggaacaggtggcagccgatcagcaggagcgggaggccaaggctgcggcggagcaggcc
tggaaccagttcattgcgcggctggagcggggagcgattgagagcgaggaccgggaacgg
ctggtggaagtggagaagctggccctggggctgagcgaaaacagccgtatcctgcagttg
ctgggtcaccaggagaccccggtcaatgcccaccgcatgttggttggggtgggctactgg
ccggaggagcacaacccgtatccgcaccgtcagcaggtcacctgtgaagatccccggctg
ggcctgccaccgctgccggaggagtcccgggaggacctgaccggattgccggcgtttgcc
atcgacgacgaggggagtgaagatccggacgatgccatctcactggagggagaccgcctc
tgggtgcatgttgcggatgtggcggccctgatacctcccgactcggatattgatcaggag
gcacgcagtcgtggggctaatctctatctgccggaacgcattgtgcacatgttgccaccg
caggcgacccaggtactggcgctgggtctgcaaccggtgtcaccggcgttatccatcggt
atgcggctggacgaagcggcgcgcatcagcgatgtgaaggtctgcaagagtctggtccgg
gtaacccgccactcctatggcgaaatcaaccagcgcatggacagcgcgccatttgccgcc
atcaaggccctcacggatcgttttcgggcacgtcgcctcgcggatggcgctaccagtatc
gatttgcccgaagccagcgtccgggtgcgtgacgggcaggtctgcatccgcccgctggcc
cgtatggccagccgcgacatggtcaccgaggcgatggtgatggccggtgaagcgatcgca
aattacgccctgagccagaacatcccggtgcccttcgccatccagcccgcgcccgataag
gtggagaccccggaggggctggccgccatgtacgcctatcgccgcaagatgaaaccctcc
cgatcaagcacccaggagggggtgcatgcggggctcggactgacctgttacacccggacc
accagcccgctgcgccgctatctcgatctggtggttcaccagcaactgcgtgcccacctg
gatggccgggagctgttgtcgttcaagcaggtgggcgagcggattgccgcggtggagccg
ctgaatggggccatccggcgggccgaaagactctccaatacccactggaagctgatccat
ctgaaacgcaatccgacctggcagggtgaggcggtggtggtggagatggagaataaccgg
gcaaccctgctgattccggaactggccatggaaaccaagctgcgggtgcgccaggatctg
aaacttgatagtcgtctctctgtggcactgcgggaagtggatgtggaggatcaggtggtc
tggttccggccactcggttaa
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