Sedimenticola thiotaurini: AAY24_02970
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Entry
AAY24_02970 CDS
T03943
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seds
Sedimenticola thiotaurini
Pathway
seds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY24_02970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seds03019
]
AAY24_02970
Enzymes [BR:
seds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAY24_02970
Messenger RNA biogenesis [BR:
seds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAY24_02970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AKH19481
UniProt:
A0A0F7JSQ3
LinkDB
All DBs
Position
680840..682291
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AA seq
483 aa
AA seq
DB search
MSFDSLGLSAEILRAVSEQGYTEPTPVQRQAIPVVLEGKDILAGAQTGTGKTAGFTLPLL
QLLSQQAQGKGHRPIRALVLTPTRELAAQVAESIETYGKHLPLRSTVVFGGVKINPQIEK
LRHGVDILVATPGRLLDHAQQKTVDLSHVEFLVLDEADRMLDMGFIHDIRKVLALLPSAR
QNLLFSATYSQEIKTLADKLLNAPVLIEVARRNTAAETVEQRVYRVDRERKRELLSFLVG
SRNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALAGFKQGDIRVLVA
TDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGREGEAISLVCVDENRLLRDIE
RLLKRELPSEILPGYEPDPSIKPEPIKNGRNGGGDRGRGRAQQQAPRRRNTGQKTATAPE
QPGARRKRSAPAAAKSGNEAPRSQNSRPQRPAAKGQQQSAPSEANGNRRAPQRRRQRATL
LGG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgattcactcggcctttccgccgaaatactccgtgctgtctccgaacagggt
tacacggaaccgacgcctgtacagcgtcaagccatccctgtcgttctggaaggaaaagac
attcttgccggcgcacagaccggcactggcaaaaccgccgggtttaccctgccgttgttg
caactgctcagtcagcaggcccagggcaagggccatcgtcccatccgcgccctggtattg
acgcctacccgggagctggccgcccaggtggccgaaagcatagagacctatggcaagcat
ctgccgttgcgatccaccgttgtgttcggtggtgtgaagatcaatccacagatcgagaaa
ctgcgccacggcgtggatatcctggtggcaaccccgggtcgcctgctggatcacgcccag
cagaagacagtggatctctcccatgtggagttcctggtactggacgaggcggatcgcatg
ctggatatgggctttatccacgatatccgcaaggtgctggcgctgctgccctccgctcgc
cagaacctgctgttctcggccacctattcccaggagatcaagaccctggcggataaactg
ctgaacgcccccgtactgatcgaagtggcacggagaaatacagcggcggaaacggtcgaa
cagcgagtctaccgggtggatcgggaacgcaagcgggagttgctctcgttcctggtcggc
tcacgtaactggcgccaggtgctggtgtttacccgtaccaagcacggtgccaaccggctc
gcccagcagttggagaaggatggcctgagcgccgcggcgatccacggcaacaagagccag
ggtgcccgtacccgggccctggccggtttcaaacagggggatatccgggtgctggtggcc
accgatattgcggcccgcggactggatatcgaccaactgccccacgtggtcaattttgaa
ctgcccaacgtgccggaagactatgtgcatcggatcggacggaccggccgtgccggccgt
gagggagaggcgatctccctggtctgtgtggatgagaacaggctgctgcgggatatcgaa
cggctgttgaagcgtgaactgcccagcgagattctgccgggctatgagccggacccgagt
atcaaaccggaaccgatcaagaacggacgtaatggtggtggtgaccgtggtcggggccgg
gcacagcaacaggcaccgcgtcggcggaacacgggacagaagacggccactgcgccggag
cagccgggcgcgcggcggaaacggtccgcaccggcagccgccaagtccggcaatgaagcc
cccagatcgcaaaacagtcgtccgcaacgaccggcggccaagggtcagcagcagtccgca
ccgtcagaagcaaacggcaaccggcgggcaccacaacggcgtcgccagcgggcgacactg
ctcggcggttag
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