KEGG   Sedimenticola thiotaurini: AAY24_05215
Entry
AAY24_05215       CDS       T03943                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
seds  Sedimenticola thiotaurini
Pathway
seds02024  Quorum sensing
seds03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:seds00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AAY24_05215
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AAY24_05215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:seds03019]
    AAY24_05215
   03036 Chromosome and associated proteins [BR:seds03036]
    AAY24_05215
Messenger RNA biogenesis [BR:seds03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AAY24_05215
Chromosome and associated proteins [BR:seds03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AAY24_05215
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AKH19851
UniProt: A0A0F7JTL4
LinkDB
Position
complement(1169164..1169418)
AA seq 84 aa
MSKGQSLQDPFLNTLRKERIPVSIFLVNGIKLQGQIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARNVRLQMPGSDDATELGNS
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtctaaggggcaaagtctacaggaccctttcctcaacacgcttcgaaaagagcgtatt
cccgtatcgatcttcctggtgaatggaatcaagctacaggggcagattgaatcgtttgat
cagtttgtggtattgctgaaaaatacggtcagtcaaatggtatataaacatgccatttcc
actgtggttcccgcgaggaatgtgcggttgcagatgccgggtagtgatgacgccaccgaa
ctcggcaatagctga

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