Sedimenticola thiotaurini: AAY24_09950
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Entry
AAY24_09950 CDS
T03943
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
seds
Sedimenticola thiotaurini
Pathway
seds03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AAY24_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seds03400
]
AAY24_09950
Enzymes [BR:
seds01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AAY24_09950
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AAY24_09950
DNA repair and recombination proteins [BR:
seds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AAY24_09950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AKH20624
UniProt:
A0A0F7JZA8
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All DBs
Position
2184693..2185505
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRSGIAPHIQGQRISGVVVRQPRLRWPIPGNLGDLLGGRTVRAVERRAKYL
LLRLSNGSLILHLGMSGSLRILPRDTVPGKHDHFDLLFKQCCLRLRDPRRFGAVLWTDQP
VEQHPLIAHLGPEPLSEEFNGVYLHRQAQQRRVAIKNLIMDGRVVVGVGNIYANEALFRA
GIHPARPAGRISLARCARLAEEIKQVLAAAIIQGGTTLRDFQQEDGKPGYFAQELLVYGK
AGSPCPGCGNPLKQQRIGQRSSVYCSRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactacccgaagtcgagaccacccgcagcggcattgcgccccatattcaggga
cagcgcatcagcggggtggtggtgcgtcagccacgactgcgctggccgattcccggcaac
ctgggcgacctgctgggtggcagaacggttcgtgccgtggagcgtcgggccaaatatctc
ctgctcagactcagcaacggcagcctgattctgcacctgggcatgtccggcagcctgcgt
atcctgccccgggacaccgttccgggtaaacacgaccatttcgatctgctgttcaagcag
tgttgcctgcgcctgcgcgacccgcgccgtttcggcgccgtactctggaccgatcagccg
gtggagcaacacccgttgatagcccacctgggtccggagcccctgtcggaagagttcaac
ggtgtctacctgcaccgtcaggcgcaacagcgccgggtggcaataaagaacctgatcatg
gatggccgggtagtggtgggggtggggaatatctacgccaacgaagcgctgttccgagcc
ggcatccatccggcccggccggccggccggatctcgctggcacgctgcgcccggctggcg
gaggagatcaagcaggtgctggcggccgccattattcagggcggcaccaccttgcgggat
tttcagcaggaggatggcaaaccgggctatttcgcccaggaactactggtttacggtaag
gccggcagcccctgtcccggctgcgggaacccgctcaagcagcagcgtatcggccagcgt
tccagcgtctactgcagccgctgccaacgctga
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