Sedimenticola thiotaurini: AAY24_11475
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Entry
AAY24_11475 CDS
T03943
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
seds
Sedimenticola thiotaurini
Pathway
seds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY24_11475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seds03019
]
AAY24_11475
Enzymes [BR:
seds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAY24_11475
Messenger RNA biogenesis [BR:
seds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAY24_11475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CAP-ZIP_m
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKH20869
UniProt:
A0A0F7JZU8
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All DBs
Position
2504480..2505835
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AA seq
451 aa
AA seq
DB search
MTDKHLTDIRFNSFGLCKELAQGIEETGFSFCTPIQAETLPIALKGQDVAGQAQTGTGKT
AAFLLATYQRLLTQPATEGRKKNQPRALIVAPTRELAVQIHKDAEELGKHTDLKLGLVYG
GTGYEQQRKQLEDGVDILIGTPGRLIDYLKQHVYDLKAVQVVVMDEADRMFDLGFIKDIR
FMLRRCPPPQQRLGLLFSATLSFRVLELAYEHMNNPTTVKIETDNVTADKVKQVCYMTAN
DEKISLLIGLLKRMDAHRSIVFVNTKRGADLVWGYLEGNGIGAAVISGDVPQKKRMRLLS
DFQEGRLPVLVATDVAARGLHIPDVSHVFNFDLPDDAEDYVHRIGRTARAGASGDAISFA
CETHAFSLPDIEAYIGHRIPMEPVTSDLLFEVDPKSRIIPDRPERDKRRGSNNRSGRKPA
TRTAKPQETGTEAPKKKRRRRRKPKQTNTTE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaaacaccttacggatatccgttttaacagcttcgggctgtgtaaagaactc
gcacaaggcattgaagagactggcttttccttctgcacccccattcaagccgaaaccctg
cccatcgccctcaaggggcaggatgtagcaggacaggcccagaccggtaccggaaaaacc
gccgcttttctactggcaacctaccagcgtctgctcacccaaccggcgacggaagggcgt
aaaaagaaccagcccagggcacttatcgtggccccgacccgggagctggcggtacagatt
cataaagacgccgaagagctgggcaagcacaccgacctcaaactggggctggtctatggc
ggcaccggctacgaacagcagcgcaagcagctggaggacggtgtcgacatactgatcggc
acacccggccgcctgatcgactatctgaaacagcacgtctacgacctgaaagcggttcag
gtggtggtgatggacgaggcggatcgcatgtttgatctgggcttcatcaaggacatccgc
tttatgttgcgacgctgcccgccaccacagcagcgactgggactgctgttctccgccacc
ctgtcattccgggtgctggagctggcctacgagcacatgaacaatcccaccacggtgaag
attgaaacggacaacgtgaccgccgacaaggtcaagcaggtctgttacatgaccgccaac
gacgaaaagatctcgttactgatcggcctgctgaaacggatggacgcccatcgcagcatc
gtcttcgtcaacaccaagcgcggtgcagacctggtctggggctacctggagggcaacggc
attggcgccgcagtcatatccggtgatgtaccccagaaaaaacgcatgcgcctgttgagc
gacttccaggaggggcgtctgccggttctggttgccaccgacgtggccgcccgcggcctg
catatcccggacgtctcccacgtgttcaactttgacctgccggacgatgcggaggactat
gtgcaccgcatcgggcgcaccgcccgggccggcgccagtggcgacgcaatcagctttgcc
tgtgagacccacgccttctcgctgcccgatatcgaggcctatatcggccatcgcatcccg
atggagccggtcaccagtgatctgctttttgaggtcgacccgaaaagccgcatcattccg
gaccgtccggaacgggacaagcgacggggcagcaataaccggtctggccgcaaacccgcc
acccgcaccgccaaaccccaggaaaccgggacagaggcacccaagaaaaagcgccgcaga
agaagaaaacccaagcagaccaacaccactgaatag
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