Sediminibacterium planctonicum: TEGAF0_00100
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Entry
TEGAF0_00100 CDS
T08564
Name
(GenBank) DNA-directed RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
sedt
Sediminibacterium planctonicum
Pathway
sedt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TEGAF0_00100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedt03021
]
TEGAF0_00100
Transcription machinery [BR:
sedt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TEGAF0_00100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_Mga
ARM_CPL3
Motif
Other DBs
NCBI-ProteinID:
BDQ10793
LinkDB
All DBs
Position
9553..10143
Genome browser
AA seq
196 aa
AA seq
DB search
MLSNVEINNLLEAISTRDCEKSYKALFVSLHESLYSFAFTFLKSSEDSEEVVSDLFINLW
MKRKNLKRLDNPKLYLLIGTKNFALNRLKLNKRKASLQLDDFSMHLESVFFNPEELAISA
ELTQKIMDAVNALPPKCKIIFKLIKEESLKYHEVSELLDLSVKTVESQMAIALRRIRQCL
EFKHEFPEIHSILAKK
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
gtgctgtcaaatgtagaaattaataatttacttgaagctatctctaccagagattgtgaa
aagtcttacaaggcgctattcgtttcactacacgaaagcctttacagctttgcttttaca
tttcttaaatcatctgaagattcggaagaagtggtttctgatctttttattaatttatgg
atgaaaaggaagaatttaaagcgtttggataaccccaagctttatctgctaattggaaca
aaaaactttgctttaaaccgtttaaaactcaataagcgtaaagcatcacttcagttagat
gatttttcgatgcaccttgagagcgtcttttttaatccagaggaattggccatctctgct
gaactgacccaaaaaataatggacgcagtgaatgccttacctcccaaatgcaaaatcatc
tttaagttgattaaagaagaaagtttgaaataccatgaagtttccgaactcctggatctg
tctgttaaaacagtggagtcgcaaatggcgattgctcttagaagaattcgtcaatgttta
gagtttaaacatgaattccctgaaatccattctattttagccaaaaaataa
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