Sediminibacterium sp. TEGAF015: TEGAF0_05650
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Entry
TEGAF0_05650 CDS
T08564
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEGAF0_05650 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedt03019
]
TEGAF0_05650 (groL)
03110 Chaperones and folding catalysts [BR:
sedt03110
]
TEGAF0_05650 (groL)
03029 Mitochondrial biogenesis [BR:
sedt03029
]
TEGAF0_05650 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sedt04147
]
TEGAF0_05650 (groL)
Enzymes [BR:
sedt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
TEGAF0_05650 (groL)
Messenger RNA biogenesis [BR:
sedt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
TEGAF0_05650 (groL)
Chaperones and folding catalysts [BR:
sedt03110
]
Heat shock proteins
HSP60 / Chaperonin
TEGAF0_05650 (groL)
Mitochondrial biogenesis [BR:
sedt03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
TEGAF0_05650 (groL)
Exosome [BR:
sedt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TEGAF0_05650 (groL)
Exosomal proteins of other body fluids (saliva and urine)
TEGAF0_05650 (groL)
Exosomal proteins of breast cancer cells
TEGAF0_05650 (groL)
Exosomal proteins of colorectal cancer cells
TEGAF0_05650 (groL)
Exosomal proteins of bladder cancer cells
TEGAF0_05650 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
NNH2
Motif
Other DBs
NCBI-ProteinID:
BDQ11348
LinkDB
All DBs
Position
638195..639829
Genome browser
AA seq
544 aa
AA seq
DB search
MAKQIYFDIEARNKMKKGVDTLANAVKVTLGPKGRNVVIEKKFGAPSVTKDGVSVAKEIE
LEDAIENMGAQMVKEVASKTADIAGDGTTTATVLAQAIISEGLKNVAAGANPMDLKRGID
KAVAKVVDSLRAQSQTVGNDTKKIEQVATISANSDNEIGKLIATAMAKVGKEGVITVEEA
KGTDTTVDVVEGMQFDRGYISPYFVTNSEKMEAEMQNPYILIYDKKISAMKDILHILEKV
AQTGRPLVIIAEDLEGEALATLVVNKLRGTIKVAAVKAPGFGDRRKEMLTDIATLTAGTV
ISEEQGFKLENADLTYLGQAASITIDKDNTIVVGGKGKKADIAARVNQIKAQIENTTSDY
DREKLQERLAKLSGGVAVLYVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVAYI
RAVESLEKLKGANEDEATGIQIVKRAIEEPLRQIVVNSGIEGSIVVQKIKEGKADFGFNA
RTEVYENLFKAGVIDPTKVSRVALENAASIAAMLLTTECVIADKPKPEAPHAHGGAPDMG
GMGY
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcaaatttattttgacattgaggctagaaataaaatgaaaaaaggcgttgac
actttagccaacgctgtaaaagttaccttaggaccaaaaggtcgtaacgtagttattgag
aaaaaattcggtgcaccttctgttacaaaagatggtgtttctgttgctaaagaaattgaa
ttagaagacgctattgagaacatgggcgctcaaatggttaaagaagtagcttctaagact
gcagatattgcaggtgatggtactacaactgcaactgtattggctcaggccatcatcagc
gaaggattaaagaacgttgctgctggtgcaaatccaatggatttaaagcgcggtattgat
aaagctgttgctaaagtggttgatagcctgagagcacaatctcagactgttggcaacgat
accaagaaaattgagcaggtagctactatttcagcaaacagtgataatgaaattggtaag
ttgattgctactgcaatggctaaagtgggtaaagaaggtgttattactgttgaagaagca
aaaggtacggatactactgttgatgttgtagaaggtatgcagtttgatcgtggttacatc
tcaccttactttgtgacgaacagcgagaaaatggaagctgaaatgcagaatccatatatc
ttgatttacgataagaaaatcagtgcaatgaaggatatccttcatattctggagaaagta
gcacaaacaggtcgtccattggtgattattgcagaagatctggaaggtgaagcattggca
acattggtggtgaataaattacgtggtaccattaaagtggcagctgttaaagctcctggt
tttggtgaccgcagaaaagaaatgttaactgatatagctacattgactgcaggtactgtg
atcagtgaagaacaaggcttcaaattagagaacgcagacttaacttatttaggtcaggct
gcatctattactattgacaaagacaacaccattgttgttggtggtaagggtaagaaagct
gatattgctgccagagtaaatcaaattaaggctcagattgaaaatacaacttctgattac
gatcgcgaaaaattacaggagcgtttagctaaattaagcggtggtgttgctgtattatac
gtaggtgctgcaactgaagttgaaatgaaagaaaagaaagatcgtgtagacgatgcttta
catgcaaccagagcagctgttgaagaaggtattgtacctggaggtggtgttgcttatatc
agagcagtagaaagccttgaaaaattaaaaggtgctaacgaagatgaagcaactggtatc
caaatcgttaaaagagcaattgaagagccattgcgtcagattgtagtaaacagtggtatt
gaaggttctattgtagtacagaagatcaaggaaggtaaagccgactttggattcaatgct
cgtactgaagtatacgagaacctattcaaagcaggcgtaattgatcctaccaaggtatct
cgtgttgcattggaaaatgctgcatcaattgctgcgatgttattaactacagaatgtgta
attgctgataagccaaagcctgaagctcctcatgcgcacggtggtgctcctgatatgggc
ggaatgggttattaa
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