Sediminibacterium sp. TEGAF015: TEGAF0_08040
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Entry
TEGAF0_08040 CDS
T08564
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase (aminomethyl-transferring)
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt00260
Glycine, serine and threonine metabolism
sedt00630
Glyoxylate and dicarboxylate metabolism
sedt00670
One carbon pool by folate
sedt00785
Lipoic acid metabolism
sedt01100
Metabolic pathways
sedt01110
Biosynthesis of secondary metabolites
sedt01200
Carbon metabolism
Module
sedt_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
TEGAF0_08040 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
TEGAF0_08040 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
TEGAF0_08040 (gcvP)
00670 One carbon pool by folate
TEGAF0_08040 (gcvP)
Enzymes [BR:
sedt01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
TEGAF0_08040 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
BDQ11587
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Position
919259..922132
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AA seq
957 aa
AA seq
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MNLFQHQSTEFQRRHIGPNPSDLKAMLATINEPNIESLISKTVPDSIRIKGDLNVPPAIS
EFEYLTELKKVAAKNKLYKNFIGQGYYGTITPSVILRNIFENPGWYTQYTPYQAEISQGR
LESLLNFQTMVSDLTGLPMANASLLDEATAAAEAMAMLFHQANKTDNITKPKLFVDNNIF
PQTKQVLITRAEPIQVELVFGDYKNSKIDETYFGVILQYPADNGSVEDYKGFIDSVHAAN
AYVIMATDLLALTVLTSPGELGADVAVGSAQRFGVPMGYGGPHAAFFATSDDFKRGMPGR
LIGVSIDAQGNRALRMALQTREQHIKREKATSNICTAQALLANMAAMYAVYHGPQGLKNI
ASRVHALAQTTAKALNALGIQQNNTNYFDTLHISGVDATDVKAAAEKAEINLRYFANGTI
GISIDETTTLSDVQALVKVFESVTGKSAGNLATAENGAAIPASLQRTSTYLSHPVFNTHH
SESQMMRYIKSLENKDLSLNTSMISLGSCTMKLNAATEMIPVSWPEFGGLHPFVPVNQTE
GYQQILQELNQYLCAVTGFTACSLQPNSGAQGEYAGLLTIREYHKSRNEAHRNIVLIPIS
AHGTNPASAVMAGFKVVVVKCDEAGNIDVADLKAKAEQYKDNLGGLMVTYPSTHGVFEET
IKEICAIIHENGGLVYMDGANMNAQVGLTSPGMIGADVCHLNLHKTFAIPHGGGGPGMGP
ICVNDKLAPFLPGHLTGYAKSGLEVSAAPFGSASILLISYAYIKMLGADGIRMSTEYAIL
NANYMKARLEKHYPILYTGKNGTCAHEFIVDLRPFKQSAGVEAEDVAKRLIDYGFHAPTM
SFPVAGTIMIEPTESEDKAELDRFCDALIAIHGEIKDIESGKADKANNPLKNAPHTQAVV
CADEWTRPYSRQEAAFPLYYVTLNKFWPSVARVNNTHGDRNLICTCEPVSSYAEENA
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttcagcatcaatccaccgagtttcaacgcagacatataggacccaatcct
agcgatttgaaagccatgttagctaccattaacgaacccaatattgagtcgttaatcagc
aagaccgtacctgatagtattcgcattaaaggcgatttgaatgtaccgcctgccatcagt
gaatttgagtacctgaccgagttgaaaaaagtggctgcaaaaaataaattgtacaagaat
tttattggacaaggctactacggcaccatcactccaagtgtgattcttcgtaatattttt
gagaacccaggatggtatactcagtatactccttaccaggccgaaatttctcagggtcgt
ttggaaagcttattgaatttccaaacaatggtatccgacttaaccggattgccaatggcc
aatgcctcacttttagacgaagcaacagcagctgctgaagccatggcaatgttgttccac
caggccaataaaacagacaatattaccaagcctaaattatttgtagacaacaatatattc
ccacaaaccaagcaggtattgattacccgcgcagaacccattcaggtagagctggtattt
ggagattataaaaacagcaagattgatgaaacctattttggtgtcatcttacaataccct
gcagacaatggttctgtagaagactacaaaggtttcattgacagcgtacatgctgccaat
gcctatgtaattatggcaactgatttattggctttaacggtattgacttctccgggagaa
ctgggtgcagacgttgctgtaggttctgctcagcgctttggtgttcccatgggatatggt
ggaccacacgctgctttctttgctaccagtgatgatttcaaaagaggcatgccgggcaga
ttgattggcgtaagcattgatgcacagggcaaccgtgcattaagaatggcactacaaacc
agagagcagcatatcaagcgcgaaaaagccacttccaatatttgcactgcgcaagctttg
ttggcgaatatggctgccatgtatgcagtgtaccacggtcctcagggattaaaaaacatt
gcgagcagagtgcatgcattggcacaaacaactgccaaagcattgaatgcattgggcatt
cagcaaaacaacaccaattattttgatactttacatatcagtggtgtagacgcaacagac
gtaaaagcagcagcagaaaaagcagaaatcaatttgcgttattttgccaatggtacaata
ggtatttcaattgatgaaaccactaccctttcagatgtacaggcattggtaaaagtattt
gaaagcgtaaccggaaagtcggcaggcaatttggcaactgcagaaaacggtgcagctatt
cctgcttccttacaaagaaccagtacctacctgtcacatcctgttttcaacacacatcat
agcgaaagccagatgatgcgttatatcaagtctttggaaaacaaagatctttctttgaat
accagcatgatcagcttaggttcctgcaccatgaaactgaatgcagcaacggaaatgatt
ccggtgagctggcctgagtttggtggattgcatccctttgtaccggtaaatcaaaccgaa
ggataccagcaaattttacaggagctgaatcaatacctatgtgcagttaccggctttact
gcttgtagcttacaacccaacagtggtgcacagggagaatacgctggtttattaaccatc
agagaataccacaagagcagaaacgaagcacacagaaatattgtgttgattccgatcagt
gcacatggtaccaaccctgccagtgctgtaatggcgggctttaaagtggtggtagtaaaa
tgtgatgaagcaggaaatattgatgtagccgacttaaaagcaaaagcagaacaatacaag
gataacttaggtggattgatggtaacctatccatctacccacggtgtgtttgaagaaacc
atcaaggaaatctgtgctatcattcacgagaacggaggattggtatacatggatggagcg
aacatgaatgcgcaggtaggtttaaccagcccgggcatgattggtgcagatgtatgtcat
ttgaatttacataagaccttcgctattccacacggtggcggcggacctggcatgggccca
atttgtgtaaacgataagctggctcctttcttaccaggacatttaaccggatatgcaaaa
tcaggactggaagttagcgcagcaccatttggttcagcaagtattttattaatcagctat
gcctatatcaaaatgctgggagcggatggtatcagaatgagtacagagtacgctatcctg
aacgccaactacatgaaggcaagattggaaaagcattaccctattttatataccggtaaa
aacggcacttgtgcacacgaattcatcgtagacctaagacctttcaaacagtctgcaggg
gtagaagcagaagacgtagctaagcgtttgattgactatggtttccacgcgccaaccatg
agtttccctgttgcaggcaccatcatgattgaacccacagaaagcgaagacaaagcagaa
ctagatcgtttctgcgatgccttaattgccatccacggtgaaatcaaagacattgaatca
ggcaaagcagataaggccaacaacccattaaagaatgcaccacatacgcaagccgttgta
tgtgcagacgaatggacccgtccttatagcagacaggaagccgcattcccattgtattat
gtaaccctgaacaaattctggccaagtgtggctagggtgaacaatacgcatggagacaga
aacctaatctgtacttgtgagcctgtatcttcttatgcagaagaaaatgcgtaa
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