Sediminibacterium sp. TEGAF015: TEGAF0_10620
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Entry
TEGAF0_10620 CDS
T08564
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TEGAF0_10620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedt03021
]
TEGAF0_10620 (rpoC)
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_10620 (rpoC)
Enzymes [BR:
sedt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TEGAF0_10620 (rpoC)
Transcription machinery [BR:
sedt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TEGAF0_10620 (rpoC)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TEGAF0_10620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Biotin_lipoyl
MCM_C
Motif
Other DBs
NCBI-ProteinID:
BDQ11845
LinkDB
All DBs
Position
complement(1211572..1215855)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAIKRENKQRPTFSQITISLASPDSILERSFGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIIYYERYVVIQGGIKENLNMGDLLTEEEYLDLIDGLPKDNQFLPDDD
PQKFIAKMGAEAVHALLERIDLDELSFSLRNAAATETSQQRKADALKRLSVVESFRDASA
RITNRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEIKAP
EVILRNEKRMLQEAIDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKRVD
YSGRSVIVVGPELKIHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKLVDRKEAVI
WDILENILKGHPVLLNRAPTLHRLSIQAFQPKLVEGKAIQLHPLVTSSFNADFDGDQMAV
HVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYITKGRKSTETETIKGQ
GMAFYSMDEVIIAYNEGRVDLHANIRVKTNVREKGVLVKKLIETTVGRVLFNQYVPQEVG
FVNALLTKKSLREIIGDIIKITDVPKTAKFLDDIKTLGFRMAFRGGLSFSVNDLIVPEIR
NELLESAKAEVEEVWDSYNMGLITNNERYNQVIDIWGRVDMKITESLIREMTIDNQGFNS
VFMMLDSGARGSKTQVKQLVGIRGLMAKPRKSGSSGSEVIENPILSNFKGGLNVLDYFIS
THGARKGLADTALKTADAGYLTRRLVDVSQDVVISEEDCGTLRGIATSALKDNEDVIEPL
ADRIEGRTSLHNVYHPITEELIILAGEEISSDVAKQIEEVGIETVEIRSVLTCESKRGVC
VKCYGKNLATGYLAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASIESTLQAKFD
GTIQFDGLRTVDTVGNDGTKSKIVIGRTGEVRIMDVKNDRLMITNNVPYGATLNVKDGAQ
VKKGDVICTWDPFNNVIVAESNGTIKFENILDGITYRDESDEQTGHREKVVIETKDKTKI
PTIIVEGKDIKQYNLPVGSHIGVEEGDEVKAGQVLVKIPRILGKLRDITGGLPRVTELFE
ARNPGNPAIVCEIDGVVSFGNVKRGNREIIVESRDGMIKKYLVPLTRQILVQDGDFVKAG
TPMSDGQIAPADILAIKGPFAVQEYVVNEIQEVYRLQGVKINDKHVEVIVRQMMKKVEIV
DAGDTKFLEEDLEDRFDFIEENDRIFDKKVVTNAGESAKMRAGQIITLRELREENSILRR
ADKKLVEVRDAKPATARPVLLGITKASLGVQSWISAASFQETTKVLSQAAIQGKTDAMLG
LKENVITGHLIPAGSGQKEFENMIVGSKEEYEVLATTREAMSFDEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcaaaagagaaaacaaacagcgtccaaccttttcacagattacgattagtctg
gcatctccggatagtatcttggaaagaagttttggcgaagtactgaaacctgaaaccatc
aactatcgtacctataagcctgaacgtgacggcttattctgcgaaagaatcttcggaccc
gttaaggactacgaatgtgcttgtggaaaatataagcgtatccgttacaagggaatcgta
tgtgaccgttgtggtgtggaagtaacagaaaagaaagtgcgtcgtgaacgcatgggacat
attaaactggtagttcctgtagtacatatctggtacttcaagagcttacctaataaaatt
ggttacttgcttgggatgagttccaagaaactggaaaccattatttattatgagcgctat
gtagttattcaaggtggtataaaagagaacctaaacatgggtgatcttttaaccgaagaa
gaatacttagatttaattgatggtttaccaaaagacaaccagtttttacctgatgatgat
cctcaaaagttcatcgctaaaatgggagctgaagcagttcatgctttgttggagcgcatt
gatttagatgaattaagtttttctttaagaaatgcagcagcaactgaaacttctcagcag
cgtaaagcagacgcccttaagcgtttgagcgtagttgaatctttccgtgatgctagcgcc
agaattaccaatcgccctgagtggatggtaatgcagtatataccggttattccaccagaa
ttgcgtccattggttccattggatggtggtagattcgcatcttctgatttgaatgattta
taccgtcgtgtaatcatccgtaacaaccgtttaaagcgtttgttagaaattaaagcaccg
gaagttatcttaagaaacgaaaagagaatgttgcaggaagcaattgactccttgttcgat
aactcccgtaagtctaatgctgttaaagcagagggcggccgtgcgctaaaatctttatcc
gatgtactgaaaggtaaacaaggtcgtttccgtcagaacttattgggtaagcgtgttgac
tattctggtcgttctgtaatcgtagtaggacctgagttgaaaatacacgagtgcggatta
ccaaaagacatggctgctgaacttttcaagccatttgttattcgtaaattaattgaaaga
ggtatcgtgaaaaccgttaagtctgctaagaaattagtagatcgcaaagaagcggttatc
tgggatattcttgaaaatatcttaaagggtcatccggttttattaaaccgtgccccaaca
cttcaccgtctatctatccaggcattccagcctaaattggtagaaggtaaagccattcaa
cttcacccattggttacctcatcattcaacgcggatttcgatggtgaccagatggccgtg
cacgttccattaagcaatgctgctattttggaagcacaattgttgatgttgtcttctcac
aacattctaaacccgcagaatggtacacctataacccttccttcacaggacatggtactt
ggattgtattacattaccaagggaagaaagtctaccgaaactgaaaccatcaaaggtcag
ggaatggctttctatagcatggatgaagtgatcattgcatacaatgaaggaagagttgac
ttacatgcgaacatcagagtaaaaaccaacgttcgagagaaaggtgttttggttaagaaa
ttgattgaaactactgttggtcgtgtattgttcaatcaatatgtaccgcaggaagttggc
ttcgtaaatgcattgttgactaagaaaagtcttagagaaatcattggtgatattattaaa
atcactgacgttcctaaaactgctaaattcttggatgatatcaaaacacttggattccgt
atggcattccgtggtggattgagcttcagtgttaatgacttgatcgttcctgaaatcaga
aacgaattattggaaagtgcaaaagcagaagtagaagaagtttgggatagctataatatg
ggtcttatcaccaataacgagcgttacaaccaggtaattgatatctggggtagagtcgat
atgaaaatcacagagtctttgattcgtgaaatgaccatcgacaaccaaggcttcaactca
gtatttatgatgttggattctggtgcccgtggtagtaaaactcaggttaagcagctagtg
ggtattcgtggtctgatggctaaacctcgtaagagtggtagctctggatctgaggttatt
gagaatccaatcctctccaactttaaaggtggattgaacgtattggattactttatctct
acccacggtgcgcgtaagggtcttgcggataccgcccttaaaacagcggatgctggttac
ttgacccgtcgtttagtggacgtttctcaggatgtggttatttcagaagaggattgcgga
accttacgtggtattgcaacttctgcactgaaagacaatgaagatgttattgaaccatta
gcagatagaattgaaggacgtacttcattacataatgtataccacccaattactgaagag
ttgatcatccttgcgggtgaggaaatttcttctgatgtggctaagcaaattgaagaagtg
ggtattgaaacggttgaaatccgatctgtacttacctgcgaaagcaagcgtggtgtatgt
gtgaagtgttatggtaaaaaccttgcaaccggatatttggctcaaaggggtgatgcagtt
ggtattattgccgctcaatccattggtgaacctggtacacagcttacactacgtaccttc
cacgtgggtggtgttgcgggatctgcttctattgaatcaactttacaagctaagtttgat
ggtaccattcaatttgacggattaagaactgttgatacggttggtaatgacggaaccaag
tctaaaattgttattggacgtacaggtgaagttagaatcatggacgtgaaaaacgatcgt
ttaatgattaccaacaacgttccttacggtgctactttaaatgttaaagatggtgcgcag
gttaagaaaggagatgttatctgtacatgggatccattcaataacgtaattgttgctgaa
agcaatggtactattaagtttgaaaacattcttgatggtattacttaccgtgatgagtct
gacgaacaaacaggtcaccgcgagaaagtggttattgaaacaaaggataaaaccaagatc
ccaactatcatcgtagaaggtaaagacattaagcagtacaacttaccagttggttcacat
attggtgtagaagaaggagacgaagtaaaagcaggtcaggtattggtgaagatcccacgt
atcttaggtaaactaagagatatcaccggaggtcttcctcgtgtaactgaattatttgaa
gcgcgtaatccaggaaaccctgcgattgtttgtgaaattgatggtgttgtatcattcggt
aatgtgaagcgtggtaatcgtgagattattgttgaatcacgtgatggaatgataaagaaa
tacctggttccattgactcgtcagattcttgttcaggatggtgacttcgtgaaagctggt
actccaatgtctgacggacagattgctcctgccgacattcttgctatcaaaggaccattt
gcagttcaggaatatgtagtgaatgaaattcaggaagtttaccgtttacaaggggtaaaa
atcaacgacaagcacgttgaagtgattgtacgtcagatgatgaagaaagtagaaattgtt
gacgctggagatactaaattcttagaggaggacctggaagatcgcttcgactttattgaa
gagaacgacagaatctttgataagaaagttgtaaccaatgctggagaaagcgctaaaatg
agagctggtcaaattatcactttacgcgaattaagagaagagaattccatcttacgtcgt
gcagataagaaactagttgaagttagagatgctaagcctgcaactgcccgtccggtgttg
cttggtattaccaaagcttcattgggtgttcaaagctggatttcagctgcttcgttccag
gaaacaactaaggtattaagtcaggccgctattcagggtaagacagatgctatgttgggt
ctgaaggagaacgttattactggacaccttattcctgctggttccggacagaaagagttc
gagaacatgattgtaggaagtaaggaagaatatgaagtactagctactaccagagaagca
atgagctttgacgaagaagagtaa
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integrated database retrieval system
