Sediminibacterium sp. TEGAF015: TEGAF0_14420
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Entry
TEGAF0_14420 CDS
T08564
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TEGAF0_14420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_14420 (mfd)
Enzymes [BR:
sedt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEGAF0_14420 (mfd)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TEGAF0_14420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
BDQ12225
LinkDB
All DBs
Position
complement(1614042..1617467)
Genome browser
AA seq
1141 aa
AA seq
DB search
MNLPHLMDQYLQSPLVEQLVKRVNYADPQQLYLKNLQGSSAEFIVSAVFQHEDGRNLNHL
IVLNDAEEAAYFHNTLENLTSALDLFYFPSSFKNRKNFRLLNSSHVMLRTEALTKLSGGG
NKKIVVTYPEAVFEKVILPGTISSNIISIKTNDTIQPESLMDLFVMYGFERTDFVYEPGQ
FALRGGILDIYSFGNEKPYRVELFGNEVDSIRIFDPETQLSERKLLQVNIIPNVDILPDT
AGADAGEKISLFEFMPENTVIWMKDWDVIEEKIRTQASDLEGFLQLQAEGYFSKQQDEEE
QHILKSVSPADFIAASNLLPILLQKKLVEFGFKPQLTKEELVFETRPQPAFNRQFELLIK
DLKSLEGAGYSIYIFADQIKQLERLHTIFTDLQTEIQFTPVGTSIHEGFIDHALKLVCYT
DHQIFQRYHKYRVKQAYNKNKALTLKTLRDLQPGDYVTHIDHGVGTYSGLQKLEVNGKIQ
EAVRIIYKDSDILYVNINSLHKISKYTGKEGTVPKINKLGSDVWNRLKEKTKAKVKEIAF
DLIKLYAQRKAQKGFAHAPDNYMQTELEASFIYEDTPDQSKATADVKKDMEQEAPMDRLV
CGDVGFGKTEIAIRAAFKTVVDGKQAAILVPTTILAFQHYKTFKDRLKDFPVTVDYINRF
KSAKEKKETLQRLKEGKVDIIVGTHGLLGKEVAFKDLGIMIIDEEQKFGVAHKEKLKTLK
TNVDCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVHVFNDDFIRDAIYFET
ERGGQVFFIHNRIQGLAEMSALIQGLCPDLSIGYAHGQLEGHELEEKILDFIERKYDVLV
CTNIVESGVDIPNVNTIIVNNAHQFGLSDLHQLRGRVGRSNKKAFCYLLAPPISTLPVDS
RKRLQTLEQFSDLGSGFQIAMRDLDIRGAGNMLGGEQSGFMAEIGFEMYQKILEEAIKEL
KRSSFKDLFKEEISKQDDFVSDCTIDTDLEILIPDSYVESITERLSLYTRLDNCENEEEL
DTFHHELQDRFGPVPAAVEDLFTTVKCRKLAVDMGFEKMTLKDEVLRCYFINKPDSPYFE
SNLFKNVLAFLQTGTNKGKLKQTGKVFLLVVEPIKGMEEMHRFLTQMHTTVLAKPVQEAA
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgccgcatctaatggatcaatacctgcaatcacccctggtagaacagttggtg
aaacgggtaaactatgccgatcctcagcagttgtatctaaaaaatttacagggaagtagt
gcagagttcattgtgagtgccgtatttcagcatgaagatgggagaaacctgaatcatctg
attgtgttgaatgatgctgaagaagccgcttattttcacaatacccttgaaaatcttacc
agcgcattagatttattttatttcccttctagttttaaaaacaggaaaaactttcgtttg
ctcaacagttctcatgtgatgcttcggacagaggcattaaccaaattgtctggcggggga
aataaaaaaatagtagtcacttatccggaagctgtttttgaaaaagttattcttccggga
accattagtagcaatattatcagtatcaaaaccaatgataccattcagccggaaagcctg
atggatttgtttgtgatgtatggttttgaacgcacagattttgtttatgagcccggtcag
tttgctttgagagggggaattctggatatctactcttttggaaatgagaagccttatcgg
gttgaattatttggtaatgaagttgacagtattcgaatttttgatccggagacgcagttg
agtgagcgaaaattattgcaggtaaatatcattccgaacgttgatattttaccagatacg
gcgggtgccgatgcgggcgaaaaaatttctttgtttgagtttatgcccgagaatactgtt
atctggatgaaagactgggatgtaattgaagagaaaataagaacacaagcgtccgaccta
gaaggatttctccaattgcaggcggaaggatattttagcaaacagcaggatgaggaagag
caacatatattaaagtcagtatccccggcagattttattgccgcaagcaatctgttgccc
attctgctacagaagaaactggttgaatttggatttaaaccacaactgactaaagaggaa
ctggtatttgaaacaagaccacaaccagctttcaacagacagtttgaattgttaattaaa
gacctgaagtccttggagggagcgggttatagcatttacatctttgccgatcagataaag
cagttggaaagattgcatactatttttacagatttacaaaccgaaattcaatttactcct
gttggtacgagtattcatgaaggatttattgaccatgcattaaaactggtttgttataca
gatcaccagatttttcagcgataccataagtaccgtgttaagcaggcatacaacaaaaac
aaagcgcttactttaaaaacacttcgtgatttacagcctggcgattatgtaacccatatt
gatcatggtgtgggtacctatagtggcttacagaaactggaagtgaatggaaaaattcag
gaagcggtaagaatcatttataaagacagcgatatcctgtatgtaaatattaattcttta
cataaaatttcaaagtatacaggtaaggagggaaccgtccccaaaatcaacaaactgggt
agtgatgtctggaacaggttaaaagagaagacaaaggcaaaagtgaaggaaattgctttt
gaccttattaaattatatgcacagcgaaaggcgcagaagggatttgcacatgcaccagac
aattatatgcaaaccgaattggaagcttcttttatttacgaggatacacccgaccagagt
aaagctactgcagacgtaaaaaaagacatggagcaagaagcaccaatggatcgtctggtc
tgtggtgatgtgggttttggtaaaacagaaattgccatcagggcggcatttaaaacggtg
gtagacggcaaacaggctgctattttagtgcctacaaccattcttgcttttcagcactat
aaaacttttaaggatagacttaaggattttccggtaacagtagattatatcaatcgtttt
aaatcggccaaagaaaagaaggaaacccttcaacggcttaaggaaggcaaggttgatatt
attgtgggaacacatggtttattgggcaaagaagtagctttcaaagacctgggcatcatg
attattgatgaggaacagaaatttggagtggcacacaaagaaaaattgaaaacacttaaa
acaaacgtagactgcttaaccttaacggcaaccccaatcccccgaaccctgcaatttagt
ttgatgggcgccagagatttaagcattattaatacacctccaccaaatcgtcagcccata
cagactgaagtgcatgtgtttaatgatgattttattcgggatgccatttattttgaaaca
gaaagaggaggacaggttttctttattcataaccggattcagggtctggcagaaatgagt
gccttaattcagggactttgtccggatctgagtataggctatgcacatggccaattggaa
ggtcatgaactggaagaaaaaattctcgattttattgaacgcaaatacgatgtattggtt
tgtaccaatattgtagagagtggggtagatataccaaatgttaatactattattgttaac
aatgcacaccaatttggtttgagtgatttacatcagttaagaggaagggtaggcagaagc
aataaaaaagcattctgttatttattggctccgccaatcagcacattaccggttgattcc
agaaaaagattacagacactggagcaattcagtgatttaggaagtggctttcaaattgcc
atgcgtgatctggatatcagaggtgctggtaatatgctgggaggggagcagagcggattc
atggccgagattggttttgaaatgtatcagaagattctggaagaagccatcaaagaactg
aagcgatcttctttcaaggatttgttcaaggaagaaattagtaagcaggacgattttgtt
agcgattgtaccattgatacagatctggaaatattgataccggatagttatgtagaaagc
atcacagaaagattgtctttgtatacccgcctagacaattgtgaaaatgaggaagaattg
gatactttccatcacgaactgcaggatcggtttggtccggtccccgctgctgttgaggac
ttgtttacaaccgttaaatgcaggaagctagcagtagacatgggcttcgaaaaaatgact
ttgaaagacgaagtgctgcgttgttatttcatcaataagccagactctccttattttgaa
tccaacttatttaagaatgtactggcattccttcaaaccggaaccaataaaggaaaattg
aagcaaaccggtaaagtgttcttgttggttgttgagcccataaaagggatggaagaaatg
catcgttttttaactcagatgcatacaactgttttagctaaaccagtacaagaagccgca
ccctaa
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