Sediminibacterium sp. TEGAF015: TEGAF0_14550
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Entry
TEGAF0_14550 CDS
T08564
Name
(GenBank) DEAD/DEAH box family ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEGAF0_14550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedt03019
]
TEGAF0_14550
Enzymes [BR:
sedt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TEGAF0_14550
Messenger RNA biogenesis [BR:
sedt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TEGAF0_14550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
SUa-2TM
HP0268
UvrD-helicase
Cas6_I-A
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BDQ12238
LinkDB
All DBs
Position
1631292..1632536
Genome browser
AA seq
414 aa
AA seq
DB search
MLFKELELIEPILKALETEGYTNPTPIQEQAIPSALAGKDILGCAQTGTGKTAAFSIPIL
QLVCQSQLNGNFTRGIKALILTPTRELAIQIDESIAAYGKNLRISHEVIFGGVSQHHQVI
NLKKGVDILTATPGRLLDLMQQGFIHLKDIRFFVLDEADRMLDMGFINDVKKVVAKLPEK
KQTLFFSATMPDEIEKLANTLLKNPVTIAVTPVSSTVEKIEQAIYFVEKENKKNLLQDLL
EDSAIKSALVFTRTKHGADKVVKNLVKHGITSEAIHGNKSQNARQRALTNFKNGSTRILV
ATDIAARGIDVDGLSHVFNYELPNVPETYVHRIGRTGRAGESGMAISFCDTEERAYLKDI
QKLIKIELPVVSNHEYHSATPLKVSSNQPDKIKKPVPRNRMVKQSYYKSGRGSN
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
gtgttattcaaagaattagaactcattgagcctattttaaaagcgctcgaaacagaaggg
tacaccaaccctacccccattcaggaacaagcaattccatctgcccttgcaggtaaagat
attttgggctgtgcccaaacaggaacaggaaaaactgcagctttctctatccctattctg
caattggtttgtcagtctcagttaaacggaaattttaccagaggcatcaaagcattaatt
cttaccccaacaagagaattggccattcagattgatgaaagtattgcggcttatggaaaa
aatctgcgcatctctcatgaagtaatttttggaggggtgtctcaacatcatcaggttatc
aacttaaagaaaggtgtagatattttaactgctacaccaggtagattactcgacctgatg
caacagggatttattcatttaaaagatattcgcttttttgtattggacgaagccgatcgt
atgttagatatgggctttataaacgatgtaaaaaaagttgtggccaaactgcccgagaaa
aaacaaaccttgtttttctctgccaccatgcccgatgaaattgaaaaattagccaatacg
cttttaaagaatccggtaaccattgccgttacacctgtttcttctactgtagaaaaaatt
gagcaagccatttattttgttgaaaaggaaaataagaaaaatttgctacaggatttgtta
gaagatagtgccatcaagtctgcgctggtttttaccagaaccaaacatggtgcagataaa
gtggttaaaaacctggttaaacatggcattacttcagaagctatccatggtaataaatca
cagaacgccagacagagagcattaaccaattttaaaaatggcagtacgcgcattctggta
gctacagatatcgcagcaagaggtattgatgtagatggtttatcgcatgtattcaattac
gaattacccaatgtaccggaaacctatgtacacagaataggtagaactggcagagccggc
gaaagtggtatggctatttcattttgcgatacagaagaaagagcttacctgaaagacata
cagaagctgataaaaattgaattgccagttgtaagcaatcatgaatatcattctgcgacc
ccactaaaagtcagttccaatcaacccgacaaaataaagaaacctgtaccaagaaacaga
atggtgaaacagagttattataagtcgggaagaggcagcaattaa
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