Sediminibacterium sp. TEGAF015: TEGAF0_16070
Help
Entry
TEGAF0_16070 CDS
T08564
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt02020
Two-component system
sedt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TEGAF0_16070 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TEGAF0_16070 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedt03021
]
TEGAF0_16070 (rpoN)
Transcription machinery [BR:
sedt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TEGAF0_16070 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
NES_C_h
HTH_12
LacI
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BDQ12390
LinkDB
All DBs
Position
complement(1803850..1805340)
Genome browser
AA seq
496 aa
AA seq
DB search
MSLSQSLQQKLLQKLSPQQIQLMKLLQVPTANLEERIKEELEENPALEQGEEGHEEEFQD
DLKDEFDNSGEDDTDPDGSLEEYDNVDISEYVLDDDGEIADYKTKDDNYPEMDDQKVIPI
KVETSFHEMVLNQLGMLELDERSYKIAEQVVGSLDDDGYLRRELSSIADDLAFRQSLVVE
EKEIESIIVQIQQFDPAGIAARDLRECLLLQLKRKTDEGKSVELAVQILTKYFDEFTKKH
YEKIQKSLGLSDDQLKEVIGQIIKLNPKPGGNVGEMNKAETYIVPDFFVINNNGSLELSL
NAKNAPDLRVSEGYRDMLKEYEKGSKKDKRQKEAVLFIKQKIDAAKWFIDMIKQRQDTLI
GTMGAIMKYQQDFFLTGDETTLRPMILKDIAEVTGLDISTVSRVANSKFVQTEFGTYRLK
FFFSESLSTESGEEVSTREVKKILSDMIASEDKHKPFSDEVLTEMLQEKGYNIARRTVAK
YREQLNVPVARLRKEL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcagtcaatcactacagcaaaagttacttcaaaaactgtctccacagcagatt
cagttaatgaaactattgcaggtgcctactgccaatttagaagaaaggattaaagaggaa
ttggaagaaaatccggcgcttgaacaaggtgaagaaggacatgaagaagaatttcaggac
gatttaaaagatgagtttgataattcaggtgaagatgatacggatcctgatggcagcctg
gaggagtatgataacgtagatatcagtgaatatgtgctcgatgatgacggagaaattgct
gattacaaaacaaaggatgacaactatccggaaatggatgatcagaaagtcataccaatc
aaagtagagaccagttttcatgagatggtgttgaatcagttgggaatgctggaactggat
gaaagaagttacaaaatagctgagcaagttgttggcagcctggatgatgatggttacctg
agaagagagttgtcttctattgcagatgatcttgctttcaggcaaagtctcgttgttgaa
gaaaaagaaatagaatcgataattgtgcaaatccagcagtttgatcctgcgggcatagct
gccagagatttacgagaatgtttgttgcttcagttgaaacgcaaaacagatgaaggtaaa
agtgtagaactggcagttcagatcctaactaaatactttgatgaatttaccaagaaacat
tacgaaaaaattcagaaaagtcttggattgtctgatgatcaacttaaagaagtaattggc
cagataattaaactgaaccctaagccgggagggaatgttggagaaatgaataaggcagaa
acctatattgtccctgatttttttgtaatcaacaataatggttcgctggagctctcattg
aatgctaaaaatgcacctgatttaagagtgagtgaaggatacagagacatgctaaaggag
tatgagaaggggagtaaaaaagacaaacgacaaaaagaggcagtactctttatcaagcaa
aaaattgatgctgccaaatggtttatcgatatgattaagcagcgtcaggatacacttatt
ggcaccatgggtgctatcatgaaatatcagcaggattttttcctgacaggtgatgaaact
actttgcgccccatgatcttaaaagatatagcagaagtaactggacttgatatttccacc
gttagccgtgttgccaatagtaaatttgtacagaccgaattcgggacgtatcgtttaaag
tttttctttagtgaatcactaagtacagaaagcggtgaggaagtgagtacgcgtgaagtg
aagaagatcctgagtgatatgatagcttctgaagacaagcataagccttttagcgatgaa
gtgttaacagaaatgttgcaggaaaagggttataatattgccagaagaacagtagcaaaa
taccgagagcaattgaatgtacctgtagccagattgcgcaaagaactttaa
DBGET
integrated database retrieval system
