Sediminibacterium sp. TEGAF015: TEGAF0_20300
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Entry
TEGAF0_20300 CDS
T08564
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03030
DNA replication
sedt03410
Base excision repair
sedt03420
Nucleotide excision repair
sedt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TEGAF0_20300 (polA)
03410 Base excision repair
TEGAF0_20300 (polA)
03420 Nucleotide excision repair
TEGAF0_20300 (polA)
03440 Homologous recombination
TEGAF0_20300 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedt03032
]
TEGAF0_20300 (polA)
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_20300 (polA)
Enzymes [BR:
sedt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TEGAF0_20300 (polA)
DNA replication proteins [BR:
sedt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TEGAF0_20300 (polA)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
TEGAF0_20300 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TEGAF0_20300 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
RNase_H_2
HHH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
BDQ12813
LinkDB
All DBs
Position
2287812..2290631
Genome browser
AA seq
939 aa
AA seq
DB search
MEKKLFLLDALALIYRAYYALIRNPRITSKGINTNAQFGFTSTLYDLINKEKPTHLAVCF
DTHAPTERHTDFTDYKANRQEAPEDLLASLPDIQRIIRGFNIPVVEIDGYEADDIIGTLA
WQAADKGYNVYMVTPDKDYGQLLIHPHVYIYKPPAYGNAEEILDAAKICTKWDIARVEQV
VDMLGLMGDAVDNIPGIPGVGEKTAAKLLKEYDTLENILENADKIKGALGEKVRAGKESA
IISKKLATIITNVPVEFHEEDFRLKDWNREELNTVFTELEFKTLGKRILGETFNAFQAAP
VAVQTDLFGNAVEEKKTVEKETIIEDHSFGLVAEKNIENTSHEYRLVEIDAEIRDLVALL
NQQKEICFDTETTGTDANNVELVGISFSFEKGKAYYIPFTNNQKEVKEKLLLLKPLFDNA
NICWVGQNIKYDLLILKWYGIEPTGSLFDTMLAHYVIEPEGRRSMDLLSAQYLGYEPVSI
ETLIGKKGKNQGNMRDVAIDKIKEYAAEDADITLQLKHCFAPLLKTKEVEKVFYEVENPL
VRVLTDMEYEGVKIDESFLNDYSKELEKEAKKCEESVYEQAGVRFNLASPKQLGEVLFDK
LQLDPKAKKTKTGQYATGEDVLLKLAGEHKIVEDILGFRELTKLKSTYVDALPEMINPRT
GRVHTSYAQAVAVTGRLSSNNPNLQNIPIRTARGREIRKAFIPREPGRILLSADYSQIEL
RIVAAISGDPNLCDAFKQRKDIHTATAAKVYGVSETDVTKEMRYKAKSVNFGIIYGQGAF
GLAENLGVSRKEAQEIINNYKKEFPFIQKYMDDQINFAKENDYVQTLMGRKRWLRDIHSA
NFTVRGFAERNAINSPIQGTAADMIKMAMIKVHQEMKKGDWKSKMILQVHDELVFDAIVE
EADDLQNLIIQCMVSALPLPNGVPVEAEVGRGNNWLEAH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaactatttctgttagatgctttggcattaatttatagagcctattatgca
ttaatccgaaacccaagaattacttcaaaaggaataaatacaaatgcacaatttgggttt
acctcaactttatatgatttgataaataaagaaaaacccacacaccttgctgtctgtttt
gatacacatgcaccaacagaaagacacactgattttacagattataaagcaaacagacag
gaagcacctgaagatttattggcatcacttcctgatatacaaagaatcatacgcggattt
aatattccggttgtagaaattgatggatacgaggccgatgatataataggaacactagcc
tggcaggcagccgacaaaggctataatgtgtacatggttacccctgataaagactatggt
caattgttgatacacccacatgtatatatttataaaccacctgcatatggaaatgcagaa
gaaatattagatgcagcaaaaatttgcactaaatgggatatagctagggttgagcaagtt
gttgatatgctcggtttaatgggagatgcggttgataatattcctggtatacctggtgtt
ggtgaaaaaacagccgctaagttattgaaggagtatgacacactagaaaatatccttgag
aatgccgataaaataaaaggagcattaggtgaaaaagtaagggcaggaaaagaatcggca
attatcagcaaaaaactggcaacaatcattactaatgtacccgttgaatttcatgaagaa
gattttcgacttaaagactggaatagggaagaacttaatacagtttttacagaattggaa
tttaagacattgggtaaaaggatattgggagaaacgtttaatgcgtttcaggctgcacca
gttgcagttcaaacagatttattcggaaatgctgttgaggaaaagaaaactgttgaaaag
gaaactattatagaggaccatagttttgggttggttgcagaaaagaatatagaaaacact
tctcatgaatatcggttagttgagattgatgcagaaataagagatttagtagcactactt
aatcaacagaaagaaatttgttttgatacagaaacaactggaacggatgctaataatgta
gaacttgttgggataagtttttcctttgaaaaaggtaaagcttattatatcccattcaca
aataatcaaaaagaggtaaaagaaaagcttttgttgctgaagcctttatttgacaatgca
aatatttgctgggtggggcaaaatataaaatatgatttgttgattttgaagtggtatgga
atagagccaacaggaagcttatttgatactatgttagcacactatgtaattgagccagag
ggcagaaggagcatggatttgttaagtgcacaatatcttggttatgaaccggtttccatt
gaaacacttattggaaaaaaaggaaaaaaccaaggtaatatgcgggatgtggccattgat
aagataaaggaatatgcagcagaagacgccgatattacattgcaattaaaacattgcttt
gccccgctattaaagacgaaagaagttgaaaaagtattctatgaagtagaaaaccccctg
gtaagagttttaacagatatggaatatgagggggttaaaattgatgaatcctttttgaat
gactacagtaaagaattagaaaaagaagcaaaaaagtgcgaagaaagtgtttatgagcag
gctggtgttcggttcaatttagcttctccaaaacaattaggtgaagtgttattcgataaa
ctacaattagatccaaaagcaaaaaaaactaaaaccggacaatatgccaccggtgaagat
gtattattaaaattggcaggagaacataaaattgtagaagatattctaggattcagagaa
ttaaccaaactaaaatcaacgtatgtagatgcgctacccgaaatgattaacccccgcacg
ggtcgtgttcatacctcctatgcacaggctgttgcggttactggaagactaagtagcaac
aatccgaatctacagaatatccctataagaacagctagaggaagagaaataagaaaagca
tttattccgagagagccgggacgcatattgttaagtgctgattattcgcaaattgaattg
agaatagtagccgcaataagtggagatccgaatttgtgtgatgcatttaaacaaagaaaa
gacattcatacagctacagcagcaaaagtgtatggagtttcagaaacagatgtaacaaag
gaaatgcgctataaagcaaaaagtgtaaactttggcattatctatggacaaggtgctttt
gggctggcagaaaacctcggcgtgagcagaaaggaagcgcaggaaataattaacaactat
aagaaagaattcccattcattcaaaaatacatggatgatcagataaactttgcaaaagag
aacgattatgtacaaaccctaatgggtagaaaacggtggttaagagacattcatagtgct
aattttactgtaagggggtttgcagaaagaaacgctatcaattcacctatacaaggaacg
gctgcggatatgattaaaatggcgatgattaaggttcatcaggaaatgaagaagggggat
tggaaatcaaaaatgatattacaggtacacgatgaattggtttttgatgcaatagtggaa
gaagccgatgaccttcaaaatcttattattcaatgtatggtatcagccctgcccttacca
aacggagttcctgtggaagccgaagtagggagaggtaacaactggttagaagcacattaa
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