Sediminibacterium sp. TEGAF015: TEGAF0_21530
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Entry
TEGAF0_21530 CDS
T08564
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEGAF0_21530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedt03019
]
TEGAF0_21530
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_21530
Enzymes [BR:
sedt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEGAF0_21530
Messenger RNA biogenesis [BR:
sedt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TEGAF0_21530
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TEGAF0_21530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ-1-like_HTH
RecQ_Zn_bind
HRDC
ResIII
HTH_40
SpecificRecomb
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BDQ12936
LinkDB
All DBs
Position
2428360..2430618
Genome browser
AA seq
752 aa
AA seq
DB search
MPTTTKKPVTRKSTAKKTTGASQYPIHAALEQYFGFKEFKGTQEAAINSLLDGKDTFVIM
PTGGGKSLCYQLPALMLDGCAIIVSPLIALMKNQVDLVRGYSENDEVAHFLNSSLNKSQI
KAVKDDLNSGKTKLLYVAPETLTKQENLEYFSDLNISFFAVDEAHCISEWGHDFRPEYRR
LREMMDMIHPDKPVIALTATATPKVQSDIVKNLGLRDANIFISSFNRTNLFYEILPKIQK
EQTVKSIVKFITQHKGKSGIIYTLNRKTTEELAELLVANKIKAVAYHAGLDQKLRAERQD
QFLNEDVQVIVATIAFGMGIDKPDIRFVIHFNIPKSIENYYQETGRAGRDGLEGICVLYY
SHKDVSKLEHLMRDKPLSEREVGAQLIDEMVAYSESAVCRRKILLHYFGETTATENCGLC
DNCKNPKEKFEAKEEVVKVLKVVNALDGRFVTDYVVNVLTGKLTPQITMFRHDSLPEFGI
GKDKEQHLWNSLIRQLLLENLLLKDIEEYGLLKVSEKGLKYLKKPASFKMVLNNLFEDAN
ADDDESESGSQTGAATDEKLFVMLKELRQKEAKKKSLPPFVIFLESSLQDMATLYPTTLD
EMSKCQGVSKGKALKYGKPFVELIASYVEENNIEKPDDFVMRSVANAASNKIYIIQNVDK
KIPLETIARNKDLKLDQLLEEMETIAASGTRLNLDYAIDEWLGEDEQDEILEYFKSCETS
SLDVAREELAEFDFNWEQLKIMRIKFLSVYGN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgactacaaaaaaaccagtaaccaggaaatccaccgctaaaaaaactacaggc
gcaagccaatatcctattcatgcggctttggaacaatattttggtttcaaagaatttaaa
ggaacacaggaagctgccatcaatagcttattagatgggaaagacacttttgtaatcatg
ccaacaggaggaggtaaaagcctatgttatcaattgcctgccttgatgctggatggctgt
gccattattgtatctccattgatagccctgatgaaaaaccaggtggatctggtgagagga
tatagtgaaaatgacgaagtagcccattttttgaattcttcactaaataaaagccagatt
aaggcggttaaagatgatctgaacagcggaaagaccaagctattgtatgttgctccagaa
accttgactaaacaggaaaatctcgaatatttcagtgatctgaatatatctttttttgca
gtggatgaagcacactgtatttcagagtgggggcacgacttcaggccagaatacagaaga
ctccgggaaatgatggacatgattcatcccgacaagcctgttattgcccttacggctacg
gctacacccaaagttcaaagtgatattgttaaaaacctaggattaagagatgccaatatt
tttatctcttcctttaatcgaaccaatctgttctatgaaattcttccaaagattcaaaaa
gaacagactgtaaaaagtatagtcaaattcattacccagcacaaaggtaaaagcggtatt
atttatacacttaaccgaaaaacgacagaggaactggcggaattgctggttgccaataaa
ataaaagcagttgcatatcatgccggtcttgatcagaaattaagagcagaacggcaggac
cagtttttgaatgaagacgtacaggtgattgttgcaaccatagcatttgggatgggaatt
gacaagccggatatccgttttgtgattcactttaatatccctaagtctattgaaaattat
tatcaggaaacgggaagagcgggtcgtgatggtctggaaggaatctgtgtattgtattat
tctcataaagatgtatccaaactggagcatctgatgcgcgataagcctttaagcgaaaga
gaagtaggtgctcagttaattgatgaaatggttgcttattctgaaagtgcggtttgcaga
agaaagattctgctacattattttggagaaactaccgcaactgaaaactgcggactttgc
gataattgtaagaatccaaaagagaagtttgaagcgaaggaagaagtcgtaaaagtactg
aaagtagtaaatgcactagatggaagatttgttaccgattatgtggtaaacgttttaacc
ggaaaacttacacctcagattactatgttccgtcatgatagtttacctgaattcggaata
ggaaaagacaaggaacaacatttatggaacagcttaatcaggcaactcctgcttgaaaat
ctattgctgaaagacatagaagaatatggcttattgaaagtgagtgaaaagggactaaaa
tacctgaagaagccagcttcttttaaaatggtgctcaacaatttgtttgaggatgccaat
gcagatgatgatgaaagtgaaagtgggtctcaaacgggagcggcaactgatgaaaaatta
tttgtcatgctaaaagagctgagacaaaaagaggccaagaaaaaaagcttacctccgttt
gttattttccttgaaagttctttgcaggatatggctacactataccctaccacattggat
gaaatgagtaaatgtcagggggtaagcaaagggaaagcattgaagtatggtaagccattc
gtagagttaattgcgagctatgttgaggaaaataatatagaaaaacccgatgactttgta
atgcgaagcgttgccaacgcagctagtaataaaatttatatcatacagaatgtagataaa
aaaatccctctcgaaaccattgcgcgaaacaaagatttgaaactcgaccagttattggaa
gagatggaaaccattgctgcaagcggtaccagactgaatcttgattatgccattgatgaa
tggttgggtgaagacgaacaggatgaaattttggaatactttaaaagctgtgaaacttct
tcactagatgtagctcgcgaagaactggcagagtttgattttaactgggagcaattaaaa
attatgagaatcaagttcctgagcgtctacggcaattaa
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