Sediminibacterium sp. TEGAF015: TEGAF0_22490
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Entry
TEGAF0_22490 CDS
T08564
Symbol
hupA
Name
(GenBank) integration host factor subunit beta
KO
K03530
DNA-binding protein HU-beta
Organism
sedt
Sediminibacterium sp. TEGAF015
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sedt03032
]
TEGAF0_22490 (hupA)
03036 Chromosome and associated proteins [BR:
sedt03036
]
TEGAF0_22490 (hupA)
03400 DNA repair and recombination proteins [BR:
sedt03400
]
TEGAF0_22490 (hupA)
DNA replication proteins [BR:
sedt03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TEGAF0_22490 (hupA)
Chromosome and associated proteins [BR:
sedt03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
TEGAF0_22490 (hupA)
DNA repair and recombination proteins [BR:
sedt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
TEGAF0_22490 (hupA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Sulfolobus_pRN
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BDQ13032
LinkDB
All DBs
Position
complement(2542208..2542492)
Genome browser
AA seq
94 aa
AA seq
DB search
MRKSDLINNISEKTGIPKVDVLVTLETMFKEVKESLSQGQNIYIRGFGSFITKKRAAKIG
RNIKKNVAVEIPEHFIPAFKPAKEFVSEVKSKRK
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaatcagatctcatcaacaacatttctgaaaaaacaggaataccaaaagtagat
gttttggttacactggagacaatgtttaaagaggtaaaggagagtctttctcaaggccaa
aacatttacatacgtggctttggcagcttcattactaaaaaaagagctgctaaaattggc
cgtaacatcaaaaaaaatgtagcggttgaaattcctgaacattttattcctgcttttaaa
ccagccaaagaattcgttagtgaggtgaaaagcaaacgtaagtag
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