Sediminibacterium sp. TEGAF015: TEGAF0_23280
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Entry
TEGAF0_23280 CDS
T08564
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sedt
Sediminibacterium sp. TEGAF015
Pathway
sedt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEGAF0_23280 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedt03019
]
TEGAF0_23280 (rny)
Messenger RNA biogenesis [BR:
sedt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TEGAF0_23280 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
UPF0154
Motif
Other DBs
NCBI-ProteinID:
BDQ13111
LinkDB
All DBs
Position
complement(2630797..2632362)
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AA seq
521 aa
AA seq
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MDPIIYVIISAVVALVVGIIAGKFIFAKDTKKQVEEAELQAQTILKEAELRAETIKKEKQ
LEAKERFVQLKSEHEREVNDRNRKIGEMENRIKQKEISINQKEASIEKQVKENDAIKENL
NRQIELVNQKRTELEKHQEEHIRRLEKVAGLTAEDAKAQLIESLKQEAHTQALALQQEII
EDAKQKANKEARKIVIQSIQRTAAEQTIENTVTVFNLETDEIKGQIIGREGRNIRAIEAA
TGVDLIVDDTPEAIILSSFDPLRREIARLSLQRLVSDGRIHPARIEEVVEKTRRQLEEQV
MEIGERTVIEMGIHGLHKELIRIVGKMRFRSSYGQNLLMHSRETANLCGIMAAELGMNPK
LAKRAGLLHDIGKVPDEETELSHALLGAKLAEKYGENPAVVNAIGAHHDEMEMLYVISPI
VQACDAISGARPGARREIMQQYLQRIKDLENLATAYQGVEKAYAIQAGRELRVIVEADKV
SDVDSDKLSFEIAQKIQTEMTYPGQIKVTVIREKRAVNVAR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatcctataatttatgtaataatatcagccgtagttgcccttgtagtgggcattata
gcgggtaaatttattttcgccaaagacactaaaaagcaggtagaagaagccgaattacaa
gcacaaaccatcttaaaagaagctgaactaagagcagaaaccattaaaaaggagaagcaa
ttagaagcaaaagagcgttttgtacagttgaaatcggagcatgagcgcgaagtaaacgac
agaaatcgcaagattggggaaatggaaaaccgcataaagcagaaagaaatttccatcaat
cagaaagaagccagtattgaaaaacaagtgaaggaaaatgatgcgattaaggaaaacctg
aatcgtcagattgaactggttaatcaaaaacgaactgaactggagaaacaccaggaagaa
catatccgtcgcctggaaaaagtagcaggattaactgcagaagatgccaaagcccaacta
attgaaagcctgaagcaggaagcccatacacaagcccttgcccttcagcaggaaattatt
gaagacgccaagcaaaaagctaataaagaagcccgtaagattgttatccaatccattcaa
agaacagctgccgaacagaccattgagaataccgttactgtattcaatctggaaacagat
gaaatcaaggggcaaatcattggtagagaaggccgtaatatccgcgccattgaagccgct
acgggggttgatttaattgtggatgatacgccggaagctattatcctcagcagttttgat
ccacttagaagagaaattgcccgcttgagcttacagcgtttggtatcggatggacgtatt
cacccggctcgtattgaagaagtagtagaaaaaacccgtcgccaattggaagagcaggta
atggaaattggggaacgtacggtgatagaaatgggtatccacggtttacataaggaattg
atcagaatcgtaggtaaaatgcgtttccgttcttcttatggccaaaacctattgatgcat
agccgtgaaacagccaatttatgtgggattatggctgccgaattaggcatgaaccctaag
ttggctaagagagcgggtttactgcacgatattggtaaggttcctgacgaagaaaccgaa
ctaagccacgcacttttaggagctaaattagcagagaaatacggcgaaaatcctgctgtg
gtaaatgctattggtgctcaccacgacgaaatggaaatgttatacgtgatttctcccatt
gtacaggcctgcgacgcaatcagcggtgcaagacccggtgccagaagagaaattatgcag
caatacctgcaaagaatcaaggatctagagaacctggctactgcctatcagggagtggaa
aaagcctacgcaattcaagctggacgtgagttacgcgtgattgtagaagctgataaggta
tctgatgtagacagcgataagctgagctttgaaattgcacaaaaaattcaaacagaaatg
acctatccgggtcagattaaggtgactgtaatcagggaaaaaagagccgtaaacgtagcc
agatag
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