Sedimentibacter sp. zth1: JYG23_00495
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Entry
JYG23_00495 CDS
T07110
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYG23_00495 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedz03021
]
JYG23_00495 (rpoC)
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_00495 (rpoC)
Enzymes [BR:
sedz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYG23_00495 (rpoC)
Transcription machinery [BR:
sedz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYG23_00495 (rpoC)
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYG23_00495 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QSX05979
LinkDB
All DBs
Position
100066..103635
Genome browser
AA seq
1189 aa
AA seq
DB search
MKGADSLIEYNNFESIRIGLASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCEKIFGP
QKDWECHCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRL
GLMLDMSPRSLEKVLYFAQYVVTNAGDTTLSEKQLLTEMEYREYKEHYKNAFTAKMGAEA
VRDLLLKIDLEKENIELRKDLKDSKGQKKIRITRRLEVVESFRTSGNKPEWMVLDVVPVI
PPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDA
LINNGRRGRPVTGPGNRPLKSLSDMLSGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQ
CGLPKKMALELFKPFVMRQLVERGIAHNIKSAKKKVEKVDASVWDVLDDIIKDHTVMLNR
APTLHRLGIQSFEPVLVDGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAESRFMML
SINNILAPKDGRPITTPTQDMVLGSYYLTMTLPNVEEKGAGMIFKDYDEMILAYFNKDVS
LHAVVKMRKYVDGEQKLVESTVGRFIFNANIPQDLGFVDRSVDKFSLEIDKIVTKKTLEE
IIYNCFKTHGNTRTSQVLDKIKSTGFKYSTIGAITVSVSDIEVPEEKTQLIHEAEQKVME
YEKKYRRGIMTDEERYENVVKIWNDTTEKVTNVLMDNLKEDNSLYIMSVSGARGGRNQIK
QLAGMRGLMASSTGKTVEIPVKSNFREGLSVLEFFISATGTRKGLTDTALRTADSGYLTR
RLVDVSQDVIVREVDCGTTDGIEVESFVDGNERIEELRDRITDRYSAEDIVNLNTGEVIV
KAGEIINEETAVYLQKLYEDEKAIKEIKIRSVLTCKTPHGVCAKCYGNNLATGHLVHVGG
SVGIIAAQSIGEPGTQLTMRTFHTGGIAAAGDITQGLPRIEELFEARKPKGLAIISEIPG
KVSFSEKVNRKEVIITNDELMDSKTYLIPYGSKLLVGDGMEVEAGEKITDGSINPHDILR
ISGLKALQSYILMEVQRVYRMQGVDISDKHVEVIIRQMMNKVRVDDAGDTMLLPGSLVSL
QEFQKENKKIEEQGLELATGDRALLGITKASLATESFLAAASFQETTRVLTEAATKGKVD
NLIGLKENVIIGKLIPAGTGMKKYRNVGIEVEKEEEEEKEEKEEEILVE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaagggagcggactccttgatagaatataataattttgaatctataagaattgggtta
gcatcacctgaaaaaattagacaatggtctagaggtgaagttaaaaaaccagaaactatt
aactacagaacattaaagcctgagaaagatggcttgttttgtgaaaaaatatttggacca
caaaaagactgggagtgtcattgtggaaaatacaaaagagtaagatacaaaggtgtagtt
tgtgacagatgtggagttgaagttactaaagctaaagttagaagagagagaatgggtcat
attgaattagcagctccagtatctcatatttggtattttaaaggtataccaagtaggtta
ggattaatgctagatatgtctcctcgttctttagaaaaagttttatatttcgcacagtat
gttgttacaaatgctggagatacaacattatcagaaaaacaacttttaactgagatggag
tatagagaatataaagagcattataaaaatgcctttacagcaaaaatgggtgcagaggct
gtaagagatttattattaaaaattgatcttgaaaaagaaaatattgaattaagaaaagac
ttaaaagatagcaaaggtcaaaagaaaattaggattacaagaagacttgaagttgtagaa
tcatttagaacatcaggaaataaacctgaatggatggtattagatgttgttccagttata
ccacctgatttaagaccaatggtacaattagatggtggaagatttgctacttcagattta
aatgatttatacagaagagttattaatagaaataacaggttaaaaagattacttgatctt
ggagctcctgatattattgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgct
ctaatcaataatggtagaagaggaagaccagtaactggtcctgggaatagacctcttaaa
tcgttgtcagatatgttaagtggtaaacaaggtagatttagacaaaacttgcttggcaag
agggttgactactctggacgttcagttattgttgttggaccagagcttaaattctatcaa
tgtggtttaccaaagaaaatggctcttgaattattcaagccatttgtaatgagacaatta
gttgaaagaggtattgcacataatattaagagtgccaagaaaaaagttgaaaaagtagat
gcttctgtttgggatgtattagatgatatcatcaaagatcatacagtaatgcttaaccgt
gcacctacacttcatagacttggtatacagtcttttgagccagtattagttgatggaaaa
gcaatcaagcttcacccattggtatgtactgcatacaatgcagactttgatggtgatcag
atggctgtccacgttcctttatcagttgaggcacaagctgaatcaagattcatgatgtta
tctataaacaatatattagctcctaaagatggtagaccaataactactcctacacaggat
atggttttgggtagttattatttaacaatgacgctaccaaatgtagaagaaaaaggcgct
ggtatgattttcaaagattacgatgaaatgatactagcttatttcaacaaggatgtgtca
ttacatgctgttgttaaaatgagaaaatatgtcgatggagaacaaaagcttgtagaaagt
acagttggtaggtttatattcaacgcaaatattccacaagatttgggatttgttgacaga
agtgtagataaattttctcttgaaattgataaaattgttacaaagaagacacttgaagaa
attatatataattgctttaaaacacatggaaatacaagaacttcacaagtgttggataaa
ataaaatctacaggatttaagtattcaacaataggtgctattactgtcagcgttagcgat
atcgaagtaccagaagaaaagactcagcttatccatgaagcagaacaaaaagttatggaa
tacgaaaagaaatatcgtcgtggtatcatgactgatgaagaacgttatgagaatgttgtt
aagatttggaatgatactacagaaaaagtaacaaatgttcttatggataatttgaaagag
gataacagcctttatatcatgtctgtttcgggagccagaggtggacgtaaccagattaag
caattagctggtatgagaggtctaatggcaagttcaactggtaagacagttgaaattccg
gttaaatcaaactttagagaaggtttatcagtacttgaattctttatttcagctactggt
acaagaaaaggtcttacagatacagccttaagaactgccgactctggttatttaactaga
agacttgttgacgtaagccaagatgttattgttagagaagttgactgtggaacaacagat
ggtattgaagtagaatcatttgttgatggaaatgaaagaatagaagaattaagagataga
attacagatagatatagtgctgaagacatagttaacctaaatactggtgaagttattgta
aaagctggagaaattataaatgaagaaactgcagtatatttacaaaagctatatgaagat
gaaaaagcaatcaaagagattaaaattagatctgttttaacttgtaaaactccacatggt
gtttgtgcaaagtgttatggtaataaccttgcaacaggacatctagttcacgttggtggt
tctgtaggtataatagctgctcaatctataggtgagcctggtacacagcttacaatgcgt
acattccatactggaggtatagctgctgctggagatatcacacagggacttcctagaatt
gaagaattatttgaagctagaaaacctaaaggtttggcaataatttctgaaatacctgga
aaagtttcatttagtgaaaaagttaacagaaaagaagttattattactaatgatgaactt
atggatagcaagacatatttaattccttatggatctaaattacttgttggcgatggtatg
gaagttgaagccggagagaaaataacagatggttctataaatccacatgatattttaaga
ataagtggattaaaagcattacaatcatatattcttatggaagttcaaagagtatataga
atgcagggtgttgatatcagtgataaacacgttgaagttattattagacagatgatgaac
aaagttagagttgatgatgctggtgatacaatgttattacctggaagtttagtttctctt
caagaatttcaaaaagaaaacaaaaaaattgaagaacaaggactagaattagcaacaggc
gatagagcattacttggtataacaaaagcatcattggcaacagaatctttccttgcagct
gcatctttccaagaaacaacaagagttttaactgaagctgctacaaaaggtaaagtagat
aatcttattgggttaaaagaaaatgttataattggtaagttaattcctgcaggaactggt
atgaaaaaatacagaaatgtaggaattgaagtagaaaaagaagaagaagaagaaaaagaa
gaaaaagaagaagaaattttagttgaataa
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