Sedimentibacter sp. zth1: JYG23_00690
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Entry
JYG23_00690 CDS
T07110
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYG23_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedz03021
]
JYG23_00690
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_00690
Enzymes [BR:
sedz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYG23_00690
Transcription machinery [BR:
sedz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYG23_00690
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYG23_00690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DtxR
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QSX06017
LinkDB
All DBs
Position
137193..138140
Genome browser
AA seq
315 aa
AA seq
DB search
MIEIEKPNITLIDKNEKNTYGKIVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSINIQG
VLHEFSTIPGVREDVSEIILNIKDIAARMNVNGPVQLLIDAKGPKEVTAADIITGVDVEI
VNEDLHIATLEEGAELIIEMEMERGRGYVVSERNKKENQTIGVIPIDSIYTPVKKVNFSV
EDTRVGNRTDFDKLTLEVWTDGTIDPEESVSLGAKILNEHLNLFISLTDHINDVEIMVEK
EEDEKEKVLEMTIEELDLSVRSYNCLKRAGINSVEELTYKTEDDMMKVRNLGKKSLDEVG
KKLEELGLSLRKNDN
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattgaaaagcctaatattaccttaattgataaaaatgagaaaaacacatat
ggcaaaattgttgttgagccattagaaagaggttacggaacaactttagggaattcatta
agaagaatacttctttcatcgttacctggagcagctgtaacatctataaatattcaaggt
gttttacatgaattttctactatacctggagtaagagaagatgtttcagaaataattctt
aatattaaagatatcgctgcaagaatgaatgttaatggacctgtgcaacttttaatagat
gcaaagggacctaaagaggtaactgcagctgatataataactggtgtcgatgtagaaatt
gtaaatgaagatttacatattgctacacttgaagaaggcgcggaactaattattgagatg
gaaatggaacgcggacgtggatatgtggtttccgaaagaaataagaaggaaaatcaaact
ataggagttattcctattgattctatctatacaccagttaaaaaagttaatttttctgta
gaagatacaagagttggcaacagaacggattttgataaattaacactagaagtttggact
gatggtacaattgatcctgaagaatcagtatcattaggtgctaagatattaaatgagcat
cttaacttatttatatcattaactgatcatatcaatgatgttgagataatggtagaaaaa
gaagaagatgaaaaagaaaaagtattagaaatgacaatagaagaacttgatttatcggtt
agatcttacaattgtttaaagagagcaggtattaactctgttgaagagcttacttataaa
actgaagatgatatgatgaaagttagaaatcttggtaaaaaatctttagacgaagtagga
aagaaacttgaagaattaggtttatctttaagaaaaaatgataattag
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