Sedimentibacter sp. zth1: JYG23_01935
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Entry
JYG23_01935 CDS
T07110
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_01935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_01935 (rnr)
03016 Transfer RNA biogenesis [BR:
sedz03016
]
JYG23_01935 (rnr)
Enzymes [BR:
sedz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JYG23_01935 (rnr)
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYG23_01935 (rnr)
Transfer RNA biogenesis [BR:
sedz03016
]
Prokaryotic type
tRNA degradation factors
JYG23_01935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QSX06246
LinkDB
All DBs
Position
393676..395802
Genome browser
AA seq
708 aa
AA seq
DB search
MNFKEKILAFMLDEEYRPLTFKQLCDLLEVESSMRKELLRLLNELEEEGKILLTNTERYA
IPEKMGLIMGVIEGNQKGYGFLIPNNKDIRDIFISPVDLNGAMHGDKVFVKSDGNSYDDK
SPEGKVVKILERVNKTIIGAFQQSKSFGFVVPDDNKIGGDIFISKGDFNGAKNNQKVVVK
ITEWPKGRRSAEGEIIEVIGNQEDTKTHIDAVLIRHKVRQFFSADVLSQAKGIEKEIPDS
EIKRRKDLRNEIIITIDGKDAKDLDDAVSVVKIDDNKYKLGVHIADVTHYVKENSKIDKE
ALKRATSIYLADKVIPMLPKELSNGVCSLNPNEDKLTLSCEMIIDTKGKVVDYQIFESII
KTKFRMNYTDVSNIIENDDEELKVKYKEILTMIDDMKELSYILKTKRENRGCIDFDFDET
KLIVDKDGKITDVTKYERRTSNRIIEEFMLAANETIAENYYWLNIPFVYRIHEEPDEEKM
MEFSKFIFNFGYTLKGSQEVHPRELQQLLAKVSGKKEETVINTMMLRSLKKARYANECAE
HFGLAATYYCHFTSPIRRYPDLQIHRIIKAQLNNKISLTDNANLMERCALVADQSSKQER
YADEIERDTNKIRIAEFMADKVGEEYEGVISGVTGFGIFVELDNTVEGLVHISNLDDDYY
IYDANNKVLNGRVSHKTYKIGDVVKVRLDRVSIPNAEIDFAIIDKMSN
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagaaaaaatattagcttttatgttagacgaagaatataggcctttaact
tttaagcagctgtgtgatttgcttgaggttgaaagtagtatgagaaaagaattattaaga
cttctaaatgagttggaagaagagggtaaaatcctactgacaaatacagagagatatgcg
attccagaaaaaatgggattaataatgggtgttatagagggaaatcaaaagggatatgga
tttttgattcctaataataaagatattagggatatattcatatctcctgttgacttaaat
ggtgctatgcatggtgacaaagtttttgttaaaagtgatggaaactcatatgatgacaaa
agtccagaaggtaaagttgtcaaaatacttgaaagagtgaataaaacaattattggtgca
ttccaacaaagtaaaagttttgggtttgttgttccagatgataataaaataggtggcgat
atctttatatccaaaggagattttaatggcgcaaaaaataaccaaaaagtagtagttaaa
attaccgaatggcctaaaggaagaagaagtgcagaaggtgaaatcattgaagtcattgga
aatcaagaagatacaaaaacgcatatagatgcagtacttataagacataaagtaagacag
ttcttttcggctgatgtattgtctcaagctaaaggaatagaaaaagaaataccagattca
gaaataaaaaggcgtaaagatttaagaaatgaaataattataactattgatggcaaagat
gctaaagatttagatgatgcagtatcggtagttaaaattgatgataataaatataaactt
ggtgtacacatagcagatgttactcattatgttaaagaaaatagcaaaatagataaagag
gcattaaaaagagcaacgagtatttatctcgctgataaggttataccaatgcttccaaaa
gaattatctaatggagtttgtagcttgaatcctaatgaggataaacttactctttcttgt
gaaatgattatagatacaaaaggtaaagtagttgattatcaaatatttgaaagtataatc
aaaacaaaatttagaatgaattatactgatgtttcaaatattattgaaaatgatgatgaa
gaattaaaagttaaatataaagaaatattgactatgattgatgatatgaaagagcttagt
tatatacttaaaactaaaagagaaaatagaggctgtattgactttgattttgacgagact
aagcttatagttgataaagatggaaagataacagatgtaactaagtatgagagaagaaca
tcaaatagaattattgaagaatttatgttagcagcaaatgaaacaattgcagaaaattat
tattggcttaacataccgtttgtgtatcgtattcacgaagaaccagatgaagaaaaaatg
atggaatttagtaaatttatatttaattttgggtacacattaaagggaagtcaagaggta
caccctagagaattacaacaattgcttgctaaagtatcaggtaaaaaagaagaaactgtt
atcaatactatgatgcttagatcactgaaaaaagcaagatatgcaaatgagtgtgcagaa
cattttgggttagctgcaacatattattgccactttacttcaccaattagaagatatcca
gatttgcaaattcatagaattattaaagctcagcttaacaataaaatttctttaactgat
aatgcaaacttgatggaaagatgtgctttagtagcagatcaatcatcaaaacaagaaagg
tatgcagatgaaattgaaagagataccaacaaaatcagaattgcagaatttatggcagat
aaagttggcgaagagtatgaaggtgtcatttcgggtgtaactggttttggaattttcgtt
gagcttgataatacagttgaagggctagttcatatatctaatttagatgatgactactat
atttatgatgctaataacaaagtgcttaacggtagagtttcacacaaaacttataaaata
ggtgatgtagttaaagtaagacttgatagagtaagtataccaaatgcagaaattgatttt
gctataatagataaaatgagtaattaa
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