Sedimentibacter sp. zth1: JYG23_02395
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Entry
JYG23_02395 CDS
T07110
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03410
Base excision repair
sedz03430
Mismatch repair
sedz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYG23_02395 (recJ)
03430 Mismatch repair
JYG23_02395 (recJ)
03440 Homologous recombination
JYG23_02395 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_02395 (recJ)
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JYG23_02395 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JYG23_02395 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYG23_02395 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QSX06331
LinkDB
All DBs
Position
494788..496704
Genome browser
AA seq
638 aa
AA seq
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MKKVKLKVNSFSSDDINLITKTFGLTEISANILLNRGLNTVEKINCFLNPKFKYFENPLN
FKDLDLGCKRILKALTNHEKILVYGDYDVDGTTSISQFVLYLRAAGADVNYYVPDRESEG
YGISDGFLNKLDKMQIDLLITVDCGISEVCAIDKINTLGLEVILIDHHQCGEIIPNAYAV
INPKQKDCLSKNKNLCASGLSFKFLSHLNTYLKIDNIENTLLELACLGTIADIVELVNDN
RIITYNGLKLINNTKLIGLKKLIEVAGIKDKKIDAFHIGYIIAPRINAAGRMSSAKKAVE
LLLSEDEEVAESIANELESLNILRKETEQCIFNEAIKKIEDNFLYKKNIIVVSGENWHEG
VLGIVASRITEKYGKPTIVISVKGEIGKASARSLEYLDIYESLCTVDYLLDKFGGHKLAA
GLTIKKSNINEFYNELNKYIDRIVNKDSVQKVICVDSYINVKNINYTLYEEIRRFEPYGH
GNSKPLFAVVDFSIYNLKMVGKDKNHISFTIVDDNLSIKAIGFDKITILQKILLSPPSII
VSINENEFRGNKELQLILHDIEDFIYEKQDIDSNKIRIVNSVINKTKSKIIKTNIFDFAN
KISRLYNTEITVDNIICILENESNIEYILKNGILYIRK
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggtcaaactgaaagttaatagtttttcaagtgatgatataaatctcataact
aaaacatttggacttactgagatttctgctaatattttattaaacagaggtcttaataca
gttgaaaaaataaactgttttttaaatccaaagtttaagtattttgaaaatccattaaat
tttaaagaccttgatttaggttgtaaaaggattttaaaagcattaaccaatcatgagaaa
attttagtatatggtgattatgatgtcgatggtacaacatctattagtcaatttgttctt
tatttaagagctgcgggagcagatgttaattattatgttcctgacagagaaagcgaagga
tacggaataagtgatggctttctaaataaacttgataaaatgcaaatagatttgttgatt
acagtagattgtggtatttctgaagtttgtgctattgataaaattaatacactaggttta
gaggtgattttgattgatcaccatcaatgtggagaaattataccaaacgcttatgcagtt
attaaccctaaacaaaaggattgcttgtcaaaaaataagaacttatgtgcttctggattg
agttttaagtttttatcgcatttaaatacttacttaaaaattgataacattgagaatact
ttgttagaattagcgtgcttgggaacaatagctgatatagttgaattagttaatgataat
agaattattacttataatgggcttaagttaattaataatactaaattaattggattaaaa
aaattgattgaagttgcaggaataaaagacaaaaaaatagatgcgtttcatataggatat
attattgctccaagaataaatgctgctggaaggatgagtagtgctaaaaaggcagtagaa
cttcttttgtcagaagatgaagaagttgcagaatcgatagctaatgaattagaaagtcta
aatatattaaggaaagaaactgagcaatgtatttttaatgaagcaataaagaaaattgaa
gataattttctttataaaaaaaatataattgttgtttcaggtgaaaattggcacgagggt
gttcttggaatagtagcatctaggataactgaaaagtatggtaaacctacgattgttatt
tctgttaaaggtgaaataggaaaagcatcagcaagaagcttagaatatttagatatttac
gaatcactttgtacggtggattatttgcttgataaatttggaggacataagttagcagcg
ggattgactatcaaaaaatccaacataaatgaattttataatgaacttaataaatacatt
gataggatagtaaataaggatagtgttcagaaggttatttgcgttgattcatatattaat
gtaaaaaatattaattatacattgtatgaagaaatacgtagatttgaaccttatggtcat
ggtaacagtaagcctttgtttgctgttgttgatttttcaatttataatttaaaaatggta
ggtaaagataaaaatcacattagttttacaattgttgatgataatttatctattaaagca
attggttttgataaaattactatattgcagaaaattcttttgtcaccaccgtcaattatt
gtaagtattaatgaaaatgagtttagagggaataaagagctccaattaattttacatgat
atagaagattttatttatgaaaagcaagatattgatagtaataaaataagaatagttaat
tctgtaattaataaaaccaagtcaaaaataataaagacaaatatttttgattttgcaaat
aaaattagcagactatataacactgaaattactgttgacaatataatttgcatattagaa
aatgaaagtaatattgagtatattttaaaaaatggtatactatacattagaaaatag
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