Sedimentibacter sp. zth1: JYG23_02650
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Entry
JYG23_02650 CDS
T07110
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_02650
03009 Ribosome biogenesis [BR:
sedz03009
]
JYG23_02650
Enzymes [BR:
sedz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYG23_02650
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYG23_02650
Ribosome biogenesis [BR:
sedz03009
]
Prokaryotic type
rRNA helicases
JYG23_02650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSX06378
UniProt:
A0A974XDR9
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All DBs
Position
553540..555294
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AA seq
584 aa
AA seq
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MLCKIIYKEENKLMKIENIEISEKIQKGLEEMGFEELTQIQLEAIPHILEGKDIIAQSNT
GTGKTAAFGIPVIQSIDTEIRKPQAIAICPTRELAVQVANEFKKMSKFVEGLKIVSVYGG
ADIKRQIDKLRNGAQIIIGTPGRIIDLINRGVIKLEQLKTTILDEADEMLKMGFKEDIEL
ILSNVHHKTQTLLFSATIPASIKKITKQFQKDPVEIKTLREGITAKEVKQSYFIVKHSDK
IEALSRVIDTYTTKLALVFCNTKRSVDELFDVLVDRGYNCDKIHGDINQAQRLDTLNKFN
NGLVDVLIATDVAARGLDIKEVEAVINFDIPVKEDYYVHRIGRTGRAGREGLSFTLLTNK
EMSKLRAIEKYTKKSIRKRSIPTIDKVNEIKQDKFIRQIEEQIANCNTDEYAYIIKRLFE
DGNSPESIINALIKDRLTFNNADNDKDLNDNTPERRKSSRKREDEINRSGVRFFVNVGKK
DGIRPKDILGAVAGECNIPGSDIGAIEILDKFSFFTAAKEHKNVILDKMNNSAIKGRDVV
VEITTSKKSSSKSSSSNYNKPYKNNGRRDSGKKDGGKFYGRRKK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtaaaatcatatataaggaagaaaacaaattaatgaaaattgaaaacatcgaa
attagtgaaaaaatccaaaaaggactagaggagatgggctttgaagaactaactcaaata
cagttagaagcaattcctcacattttggagggtaaagatattattgctcaatctaataca
ggcacaggaaaaactgctgcatttggtataccagtaattcaaagtatagatactgaaatt
agaaaaccacaagctattgcaatatgtccgactagagaactagcagttcaagttgcaaac
gaatttaaaaaaatgtcaaagttcgtagaaggattaaaaattgttagtgtttatggtgga
gcagatataaaaaggcaaattgataaattaagaaatggagcgcagataattatcggaact
ccaggaagaattattgatttaattaatagaggcgtaataaagttagaacaattaaaaaca
acaatattagacgaagcagatgaaatgcttaaaatgggctttaaagaggatatagagtta
atccttagcaatgttcaccacaaaacacaaacgttattattttcagctacaattcctgct
agcataaaaaaaattacaaagcagtttcaaaaagatcctgtagagattaaaactctaaga
gaaggaattactgcaaaagaagttaaacaaagctattttattgtaaaacattctgataaa
attgaagcattatcaagagttattgacacatacacaaccaaattagctttagtattttgt
aatactaaaagaagtgtcgatgagttatttgatgtattagtagatagaggatacaattgt
gataagatacatggtgatataaatcaagcacaaagacttgatactttaaataaatttaat
aatggtttagttgatgttttaattgctacagatgttgcagcaagaggacttgacataaaa
gaagttgaggctgttattaactttgatataccagtaaaagaagattattatgttcataga
ataggtagaactggtcgtgccggtagagagggtttatcatttactttactaacaaataaa
gaaatgagtaagctacgtgctatcgaaaaatacactaaaaaatcaataagaaaaagatct
attcctacaattgataaagttaatgaaataaagcaagataaattcattagacaaattgaa
gaacaaatagctaattgcaatactgatgagtatgcatatattattaaaagattgtttgaa
gatggaaactcaccagaatctattattaatgctttaattaaggataggttaacttttaat
aatgctgataatgataaagatttaaatgataatactcctgaaagacgtaaatcttctaga
aaaagagaagatgaaataaatagatcaggtgtaagattctttgtaaatgtaggaaaaaaa
gatggtatcagacctaaagatatacttggtgctgttgctggtgaatgtaatatcccagga
agtgatattggcgcaattgaaattttagataaattttcattttttactgctgctaaagaa
cataaaaatgttattttagacaaaatgaacaattcagcaattaaaggtagagatgtagtt
gtagagataacaacatctaaaaaaagcagttcaaaatcatcgtcatcaaattataataaa
ccatataagaataatggaagaagagatagtggtaagaaagatggcggtaaattttatgga
agaagaaaaaaatag
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