Sedimentibacter sp. zth1: JYG23_03530
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Entry
JYG23_03530 CDS
T07110
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_03530
03016 Transfer RNA biogenesis [BR:
sedz03016
]
JYG23_03530
Enzymes [BR:
sedz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JYG23_03530
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JYG23_03530
Transfer RNA biogenesis [BR:
sedz03016
]
Prokaryotic type
tRNA degradation factors
JYG23_03530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
DUF1773
S1_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QSX06539
UniProt:
A0A974XB26
LinkDB
All DBs
Position
complement(734529..736634)
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AA seq
701 aa
AA seq
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MERIFKYIIDGKELKVTIGKIAELTRGSCIVQYGDTVIMANVAGSSEPREGVDFFPLSVD
YEEKLYAAGKIPGGFIKREGRPTEKAILTSRLIDRPIRPLFPKGYRSNVQVVVTVLSMDT
DYSPEICGMIGSSISLSISDLPFAGPTGAVAVGLIDDKFIINPNCEQREKSKLHLTVAGT
KEAIMMVEAGADEVSEQTMLEAILFAHEEIKKICVFIEEIQKEVGKPKTEYYEFKADPSI
QEEIVEYSRSKINDAIIEPDKLTRQEKIDNLKAEIMEVFSEKYPENVADIDDATYKIIKE
KVRENIVERGIRPDNRKIDEIRQITCEVGLLPRPHGSGLFTRGQTQVMNITTLGPISDVQ
ILDGLSEEESKRYMHHYNFPSYSVGEARPSRGPGRREIGHGALAERALLPVIPSKDEFPY
AIRLVSEVLSSNGSTSQASVCGSTLSLMDAGVPIKAPVAGIAMGLMKVEDKVAVLSDIQG
MEDFLGDMDFKVAGTSKGITAIQMDIKIHGINKEILEHALERARIGRLFILDKMLACIPE
PREELSKYAPKIIIMKVKPDKIRDIIGAGGKVINKIIEETGVKIDIQDDGTVFIAAENPE
SGNKAKKIIEKIVKEIEVGEVYLGKVVRITTFGAFIELEEGKDGLLHISKISDKRIKKVE
DVLSIGDKILVKVTEIDAQGRINLSRKDALPKSKDKESTKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatttttaaatacataattgatggtaaggagctaaaagtaactataggtaaa
attgcagagttaactagaggttcatgtatagttcaatatggagatactgtaataatggca
aatgtcgcaggctctagtgaaccaagagaaggtgttgactttttcccacttagtgttgat
tatgaagaaaaactttatgccgctggaaaaattccaggtggttttataaaaagagaagga
agacctactgaaaaagctattttaacttcacgtttaattgataggcctataagaccttta
tttccaaaaggatatagaagtaatgttcaagtagttgtaactgtattatctatggatact
gattattcaccggaaatttgtggtatgattggttcatcaatatcattgtctatttctgat
ttaccgtttgctggaccaacaggtgcggttgcagtaggacttatagacgacaaattcatc
ataaacccaaattgcgaacaaagagaaaaatcaaaattacacttaacagtagctggaact
aaagaagcaataatgatggttgaagctggagcagatgaagtttcagaacaaactatgcta
gaagcaatattatttgcacatgaagaaatcaaaaaaatatgtgtgtttattgaagaaata
caaaaagaagtaggaaagccaaaaactgaatattatgaatttaaagctgatcctagtata
caagaagaaattgtagagtattctagatccaaaataaatgatgctataattgagccagat
aaattaactagacaagaaaaaatagataatctaaaagctgaaattatggaagttttttct
gaaaagtatcctgaaaatgttgctgatattgacgatgcaacatacaagattataaaagaa
aaagtaagggaaaatattgttgaaagaggaattagacctgataatagaaaaatagatgaa
ataagacaaattacttgtgaagttggattattacctagaccacatggttcaggactattt
acaagaggtcaaactcaagttatgaatataacgacattaggaccaataagtgatgtgcaa
attcttgatggtttatcagaagaagaatcaaaaagatatatgcatcactacaatttccca
tcatacagtgttggagaagctagaccttcaagaggacctggaagaagagaaattggtcat
ggtgcattagcagaaagagctttattgcctgtaattccatcgaaagatgaatttccttat
gctataagacttgtatcagaagtattaagttcaaacggttcaacatctcaagcgagtgtt
tgtggttctacattatcacttatggatgctggagttccaataaaagcaccagttgctggt
atcgcaatgggacttatgaaggtagaagataaggttgcagtattatctgatattcaaggt
atggaagactttttaggagacatggatttcaaagttgcaggaacaagcaaaggtataact
gctatacaaatggatattaaaattcatggtataaacaaagaaatacttgaacatgcacta
gaaagagcaagaataggaagactattcatacttgataaaatgttagcttgtataccagag
ccaagagaagaattatctaagtatgcaccaaagataataattatgaaggttaaacctgat
aaaattagagatattattggtgcaggtggaaaagttatcaataaaataattgaagaaact
ggcgtaaaaattgatattcaagacgatggaacagtatttattgcagctgaaaatccagaa
agcggaaataaagctaagaagataattgaaaaaatcgttaaagaaatagaagttggagaa
gtttacttaggtaaagttgttagaataactacatttggagcttttattgaattagaagaa
ggaaaagatggattattacacatctctaaaatatctgataagagaattaaaaaagtagaa
gatgtattgtcaattggtgataaaatacttgtaaaagtaactgaaattgatgcacaaggt
agaattaatttatcaagaaaagatgctttaccaaaaagtaaagataaagaaagtactaaa
gaataa
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