Sedimentibacter sp. zth1: JYG23_03545
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Entry
JYG23_03545 CDS
T07110
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sedz
Sedimentibacter sp. zth1
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sedz03016
]
JYG23_03545 (truB)
Enzymes [BR:
sedz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JYG23_03545 (truB)
Transfer RNA biogenesis [BR:
sedz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JYG23_03545 (truB)
Prokaryotic type
JYG23_03545 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
HrcA
Motif
Other DBs
NCBI-ProteinID:
QSX06542
LinkDB
All DBs
Position
complement(737886..738773)
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AA seq
295 aa
AA seq
DB search
MNGVLNILKPTGMSSHDVVGFIRKTLSIKKVGHAGTLDPNVAGVLPICVGKATKFSDYLI
NGDKEYICEIVLGKSTDTQDMYGKIIDECNSIILDEIDDEAIINAINLFKGNIKQVPPAF
SAVKYKGKKLYEYARQDIIIEKEARDVTIKDLQILKIDKPRILIRVNCSKGTYMRTLCHD
IGLKLGTFAHMGILIRTQAKGLKIEDSITLDEIRYYKEINELHKCFISVDDIVPMKKVFV
DDEHYEKLVVGNEINLSLDETYIENFYVYCKNILVGIGHRVNNEQIKINKLLINR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgaacggagtattgaacatactaaaacctacgggtatgagctcacacgatgttgtggga
tttattagaaaaacccttagtataaaaaaagttggtcatgctgggacacttgatccaaat
gtggcaggcgttttgccgatatgtgttggaaaagcgacaaaatttagtgattatttaatt
aacggtgataaagaatatatttgtgagatagtattgggaaaaagcactgatactcaggat
atgtatggaaaaattatagatgaatgtaatagtattattttagatgaaatagatgacgaa
gctataataaatgcaataaacttatttaaaggtaatattaaacaagtacctcctgctttt
tctgctgtcaaatacaaaggtaaaaagctctatgaatatgctagacaggatataatcatt
gaaaaagaagcaagagatgtaacaattaaagatttacaaattttaaaaattgataaacct
agaatattaattagagtaaattgtagtaaaggcacttatatgcgtacactatgccacgat
atagggttaaaacttggtacatttgctcatatgggtatattgataagaacacaagctaag
ggacttaaaattgaagattctatcacattggatgaaataagatattataaagaaatcaat
gagctacataaatgttttatatcagtagacgatattgtacctatgaaaaaggtttttgtt
gatgatgaacattatgaaaaacttgtagtgggcaacgagataaatttatctttagatgaa
acatatattgaaaatttttatgtgtattgtaaaaacatccttgttggtattggacataga
gtaaataatgagcaaattaaaattaataaattgcttataaataggtga
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