Sedimentibacter sp. zth1: JYG23_05475
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Entry
JYG23_05475 CDS
T07110
Name
(GenBank) aminotransferase class IV
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JYG23_05475
09124 Replication and repair
03420 Nucleotide excision repair
JYG23_05475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedz03021
]
JYG23_05475
03036 Chromosome and associated proteins [BR:
sedz03036
]
JYG23_05475
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_05475
Enzymes [BR:
sedz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
JYG23_05475
Transcription machinery [BR:
sedz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JYG23_05475
Chromosome and associated proteins [BR:
sedz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
JYG23_05475
DNA repair and recombination proteins [BR:
sedz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JYG23_05475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_4
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
PDDEXK_1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QSX06897
UniProt:
A0A974XBQ5
LinkDB
All DBs
Position
complement(1102885..1106025)
Genome browser
AA seq
1046 aa
AA seq
DB search
MANVKLSVRELVAYVYKSGDLTTNKPSVDRALEGTRIHKLLQSQMDSNYHKEYYLIHSFT
YCNIDFVIEGRADGIIAEDDKITIDEIKSTYTDLSVIDKDYNLAHSSQALCYAYFYCYLE
NVTNATVQVRYCNIDTEEIKTISSDYTFKQLESLFYNLIDKYLDWAKLNVEHIINKRISV
ENIVFPFGKYREGQRDLLIAVYQTIKNKKKLFVQAPTGIGKTISVLFPAIKALNKVGNSK
IYYLTSKSSTKQIAEETIKKLQQNGLKVRATIITAKEKICCNDTFKCDAEVCPYAKGYFN
KINEVLINSLKTEYLYNREYIEQLAKKYTICPFELNLELSYVSDIVICDYNYYFDPRVAF
QREDFLDNSNDILLVDEAHNLEDRTRNMYSCELVKEEIYDIYKEIKGLDFIDKNIKKAIR
NINSEFVKLKKLMSEEKNMIIDAEPDDFLKACRKVVSKLEKWVNDKEGYNNEKLEDLYFK
CKFFIKLSEFYDENYCYYISKEKGFKIKIFLINTSEILRSILKNTYSSIFFSATLTPLKY
YRKILGGNEDEDKLISLNSPFDINNLKLMITGNLSMKYSIRDLNIKKICEYINTVVSIKK
GNYIVFFPSYSYLSKVLEVYESIFNDELVVNMSTLKENEQYEILNKFDNENNVILFTVVG
GVFSEGVNLPLNKLIGTIVIGTGIPQISFERNIIKSFFNEKYDSGYDFAYKFPGFNKVLQ
SVGRVIRTEDDLGMTLLIDSRLLSRTYTSLFPNHWREYNVIYNNIQLINTLKQFWKEGEN
IMINIVSEKNVLNGRIIDKSKTYEILENDSTRIYEVIRVINRRPTFLKEHFSRLINSIKL
SNITYNIEYEQFKQYIELLINNNDFENCNIRVTFDINEKQILLMYFIKSFYPDKSYYEDG
IHTVTIVKERKNPNIKKNTKTYREEIDEVLKKDKAFEAILVNMDKTISEGSKSNVFFVKD
SNLITAIDSDVLLGVTRDKVIEIAKELGFGIVKRKISVQELNSFDAVFITGTSNNVLPIN
SIDDIIFNSSKNKVVEKLMIKYESLL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgtaaagctttcagttagagaattagtagcatatgtatataaaagtggtgat
ttaacaacaaataaaccaagtgtggatagagctttagaaggtactagaatacacaaacta
ttgcagtctcaaatggattcgaattatcataaagaatattatcttattcatagttttacg
tattgtaatatagattttgtaattgaaggtagagcagatggtattatagccgaagatgat
aagataacaattgatgaaataaaatctacatatacagacttatctgtaatagataaggat
tataatctagctcattcttcacaggcattatgttatgcatatttttattgctatttagag
aatgttacaaatgctacagtacaagtaagatattgcaatattgatacagaagaaattaaa
actatatcttctgattacacatttaaacaattagaaagtcttttctataatctaattgat
aaatatcttgattgggctaaattaaacgtagagcacattataaataaaagaatatcagtt
gaaaatatagtattcccttttggaaaatatagagaaggtcaaagagatttgttaattgct
gtatatcaaacaattaaaaataaaaagaagttatttgttcaagcgcctacaggtatagga
aaaactatatcagtactttttcctgcaattaaagctttaaataaagttggtaattcgaaa
atttattatttaacatctaaatcatctactaagcaaatagctgaagaaaccataaaaaaa
ttacaacaaaatggacttaaagttagagctactataataacagcaaaagaaaaaatatgt
tgtaatgatacatttaaatgtgatgcagaagtttgtccttatgcaaagggatattttaac
aaaataaacgaagtgctaataaattctttgaaaactgaatacttatataatcgagaatat
atagagcaattggctaaaaagtacactatttgtccatttgaattaaatttggaattgagc
tatgtatcagatatagttatttgtgattataattattactttgaccctagagttgcattt
caaagagaggattttttagataattctaatgatattttattggtagatgaggcacataat
cttgaagatagaacaagaaatatgtatagctgtgagttagttaaggaagaaatttatgat
atttacaaagaaattaaaggtttagattttatagataaaaatataaaaaaagcaattaga
aatattaattcagagtttgttaagttgaaaaaattgatgtcagaagaaaaaaatatgatt
atagatgcagaacctgatgattttttaaaagcgtgtaggaaggttgtttcaaagctagaa
aaatgggttaacgataaagaaggttataataatgaaaaacttgaggatttatattttaag
tgtaagttttttattaaattatctgagttttatgatgaaaactattgttactatattagt
aaagaaaaaggattcaaaattaaaatatttttaataaatacatctgaaattttaagaagt
atattaaagaatacttattcttcaatttttttctcagcaacattgactcctcttaagtat
tatagaaaaatacttggaggaaatgaagatgaagataagctaatatccttaaattcacca
tttgatattaataatctgaagttgatgataacaggaaatttgtctatgaaatattcaatt
agagatttaaatataaaaaaaatatgtgagtatattaatactgtagtaagtataaaaaaa
ggcaactatatagtttttttcccatcttattcttatctaagcaaagtactggaagtttat
gaaagtatatttaatgatgagttagttgttaacatgtcaacacttaaggaaaatgaacaa
tatgagatattaaataaatttgataatgaaaataacgttatattgtttacagttgttgga
ggagtattttctgaaggagtaaatttaccattaaataaattgattggaacaattgttatt
ggaactggtattccacaaatatcattcgaaagaaatattataaaaagtttttttaatgaa
aaatatgatagcgggtatgattttgcatataaatttccaggatttaataaagtattgcaa
tcagtaggtagagttattagaactgaagatgatttaggtatgaccttattgatagattct
aggctattaagtagaacatacacatcattatttccaaaccattggagagaatataatgtt
atatataataatatccagttaataaatacactaaaacaattttggaaagaaggagaaaat
ataatgataaacatagtatcagagaagaatgtcttaaatggtagaataatagataagtcg
aaaacatatgaaatattagaaaacgactcaacaaggatttatgaagtcattagagttatt
aatagaagaccaacatttttgaaggaacattttagtagattaataaatagtataaagctt
tcaaatataacctataatatagaatatgaacaattcaaacaatatattgagcttttaata
aataacaatgattttgaaaattgcaatattagggtgacttttgatattaatgaaaagcaa
attttgctaatgtatttcataaaaagcttttatccggacaaaagttactatgaagatggt
atacatacagtaactatagtaaaagaaagaaaaaatccaaatattaaaaaaaatacaaaa
acatatagggaagaaatagatgaggtgctaaaaaaggataaggcatttgaagcaatactt
gttaatatggataaaacaataagcgagggaagtaaatcaaatgttttctttgttaaggat
agtaacctgattacagctatagattcagatgtattgctaggggttacaagggataaagtg
attgaaattgcaaaagaattaggttttggtatagttaaaagaaaaatatctgtacaagag
ttaaatagttttgatgctgtttttataactggtacatcaaataatgtactgccaataaat
tcaatagatgatattatatttaattcaagtaaaaataaggtagttgaaaaattgatgata
aagtatgaaagtttactataa
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