Sedimentibacter sp. zth1: JYG23_07125
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Entry
JYG23_07125 CDS
T07110
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
sedz
Sedimentibacter sp. zth1
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_07125
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYG23_07125
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
QSX07108
UniProt:
A0A974XC58
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All DBs
Position
complement(1398890..1399870)
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AA seq
326 aa
AA seq
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MGNNIYDNQKSIQELKAGDKIDAFVLVKSYDVKKTTAGKLYVDLNLVDRTGEINAKIWEN
PKASEEILVENSIVKVRGEILEWGGALQLKVNKIRALLENENIQISQLVPSAPIEPNEML
KEVKDFADKIKDIQIRTLVNNILEKYNNKLLFYPAAKKNHHSYRGGLLYHVLRMLKTGEM
ISMIYGSLNTDYIFAGVILHDICKVLEMDSDDFGVVSDYTMEGKLLGHIIQGVKEIEIEG
EKIGLDREKSIVLQHMILSHHYEPEYGSPKKPMTIESEVLHYLDIIDARMFDFENVLKGV
EEGRFSDRVWVLDNRSVYKPIDNNIK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataatatatatgataatcaaaagagcatacaagagctaaaagctggagataaa
attgatgcatttgttttagttaaaagttatgatgtaaaaaaaacgactgctggtaaattg
tatgttgatttaaatctggtagatagaactggagaaatcaatgctaaaatttgggaaaac
cctaaggcaagtgaagaaatattagttgaaaatagcatagttaaagttagaggtgaaatc
ctagaatggggtggagcattacaactaaaagtaaacaaaattagagctttacttgaaaac
gaaaacatacaaatttcacaacttgtaccatctgcgcctatagaaccaaatgaaatgtta
aaagaagtaaaagattttgctgataaaataaaagatatacaaattagaactctagtaaat
aatatattagaaaaatataataataagctgttattttatccagctgccaaaaaaaatcat
cattcatatagaggtggactattataccatgtacttagaatgctaaaaacaggtgaaatg
attagtatgatatatggctcattaaatacagactatatatttgcaggtgttattttacat
gatatttgtaaagtgttagagatggattcggatgattttggtgtagtttcagactatact
atggaaggaaaactgttaggacatataatacaaggtgtaaaggagatagaaattgaggga
gaaaaaataggtctagacagggaaaaaagcattgttttgcaacatatgattttatcacac
cattatgaaccagaatacggaagtcctaaaaagcctatgacaatagaatcagaggtactc
cattatctagatattatagacgcaagaatgtttgattttgaaaatgtacttaaaggagta
gaagaaggacgattttcagatagggtttgggttttagacaatagaagtgtttacaaacca
atagataacaatattaaataa
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