Sedimentibacter sp. zth1: JYG23_07380
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Entry
JYG23_07380 CDS
T07110
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz00521
Streptomycin biosynthesis
sedz00523
Polyketide sugar unit biosynthesis
sedz00525
Acarbose and validamycin biosynthesis
sedz00541
Biosynthesis of various nucleotide sugars
sedz01100
Metabolic pathways
sedz01110
Biosynthesis of secondary metabolites
sedz01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
JYG23_07380 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
JYG23_07380 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
JYG23_07380 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
JYG23_07380 (rfbB)
00525 Acarbose and validamycin biosynthesis
JYG23_07380 (rfbB)
Enzymes [BR:
sedz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
JYG23_07380 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
3Beta_HSD
adh_short
Sacchrp_dh_NADP
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
QSX07157
UniProt:
A0A974XC82
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Position
complement(1451896..1452876)
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AA seq
326 aa
AA seq
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MKILVTGGAGFIGSNFIYYMLNKYDDYEIVCLDKLTYAGNIITLATALKNSRFKFIKGDI
ADRKLVYDLFEKEKFDIVVNFAAESHVDRSVTNPEIFLVTNVLGTQVLLDASNKYGVLRF
HQISTDEVYGDLPIERKDLYFTENSLIHTSSPYSASKASADLLVQAYYRTYGTPITISRC
SNNYGAFQFPEKLIPLMIIKALNKGKLPVYGNGLNVRDWLYVIDHCKAIDLIIHSDKVGE
VYNIGGHNEKSNIEVVKTILNKLNCDESLIEYVSDRPGHDRRYAINPEKICNEFGWNPTI
KFDEGISNTIQWYLNNKKWWMDLIEK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattagtaacaggtggagccggttttattggttcgaattttatctattatatg
cttaataaatatgatgattatgaaattgtctgtttagataagcttacatatgctggtaac
ataataacccttgctacagcgctaaaaaatagtagatttaagtttattaagggagacata
gctgatagaaaattagtttatgatttgtttgaaaaagagaaattcgatattgttgtaaat
tttgcagctgaaagtcatgtagacagatctgttacaaatccagaaatttttttagtgaca
aatgtattagggacgcaagtgttgctagatgcaagcaataaatatggtgttctcagattt
catcaaatttctacagatgaggtgtatggtgatttacctatagagagaaaagacttatat
tttacagaaaattcactaatacatacttcaagtccttattcggcaagtaaagcatcagct
gatttattggtacaagcttattatagaacatacggaactcctattacaatatcaagatgt
tcaaataattatggtgcatttcaatttcctgagaaattaattccattaatgataataaaa
gcattaaacaagggaaaacttcccgtatacggaaatgggttaaatgttagagattggctt
tatgtaatagaccattgtaaagctattgacttaattattcatagtgataaagtaggtgaa
gtatacaatataggtggtcataatgaaaaatcaaatattgaggttgtaaaaacaattcta
aacaaactaaattgtgatgaatcattgatagaatatgtttctgatagaccgggtcatgat
agaagatatgcaataaatccagaaaaaatatgtaatgaatttggttggaatccaacgata
aaatttgatgaaggaattagtaatactatacaatggtatttaaataacaaaaaatggtgg
atggatttaattgaaaaatag
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