Sedimentibacter sp. zth1: JYG23_09245
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Entry
JYG23_09245 CDS
T07110
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sedz
Sedimentibacter sp. zth1
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sedz03009
]
JYG23_09245 (rlmD)
Enzymes [BR:
sedz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JYG23_09245 (rlmD)
Ribosome biogenesis [BR:
sedz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JYG23_09245 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
N6_N4_Mtase
Methyltransf_25
MTS
Methyltransf_15
TRAM
PrmA
Methyltransf_4
TRM5-TYW2_MTfase
Methyltransf_11
DOT1
FtsJ
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QSX04885
UniProt:
A0A975AF03
LinkDB
All DBs
Position
complement(1895885..1897246)
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AA seq
453 aa
AA seq
DB search
MNNITNFVELSIIDINHEGQGVAKLDNFVYFVNEAVTGDKVIARIVELKKNFAICSIEKI
IEKSIYRVDKKCEYFPKCGGCQILGFDYQEQLKYKCNRVINDFKKARINLENVQVNNTLG
MDKPFRYRNKTAFSVCKNRGKVQIGTYESNSHNLIDIDTCVLQDEICDKVVLATKQIFNK
YNVNTYDKVLNKGNVRHIVIRQNRDKEIMLIIVTNNKELENSKKIVEEIIKLVPQIKTVV
QNINSKSTSKILGYKNKILYGAGTLVDYIDDLKFIISPHTFFQVNPNQTEKLYETAIDYA
EISKDDVCFDLYCGIGTISLMAARKAKKVIGVEIVEQSIQDAKKNAINNNISNTEFFTGK
VEEVLPKLYKKNIRPNIIIVDPPRKGCEKEVLKTISDINPEKIVYVSCNPATLARDVKLL
VDSGYILKKIQPVDMFGHSTHVETVVRLCRQNH
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaataatataacgaattttgtagaattaagtataattgatataaatcatgagggtcaa
ggggtagctaaacttgataactttgtttattttgtaaatgaagcagtaacaggggataaa
gtaattgcaagaattgtagagttaaaaaagaattttgcaatttgttcaattgaaaaaata
atagaaaaatcaatatacagagttgataaaaagtgtgaatattttcctaaatgtggtgga
tgtcaaatattaggatttgattatcaagagcaattaaaatataaatgcaacagagtaatt
aacgattttaaaaaggctcgaataaatttagaaaatgttcaagtgaataatacattgggc
atggataaaccatttagatatagaaataaaacagccttttcagtgtgtaaaaatagaggt
aaagttcaaataggaacgtatgaatcgaattcacataatttaatagatattgatacatgt
gttttgcaagatgaaatatgtgataaagtagtattagctacaaagcaaatatttaataaa
tacaatgtaaatacatacgacaaagtattaaataaaggtaatgtaagacatatagttata
cgacaaaatagagataaggaaataatgcttataattgttacaaataataaagaattggaa
aatagcaaaaaaatagttgaagaaattataaaacttgtaccacagataaaaacagtagtt
caaaatataaattctaaaagcacgagtaaaatattaggttataaaaataaaattttgtat
ggagctggtacattagttgattatattgatgacttgaaatttattatatcaccgcataca
ttttttcaagtcaatccaaatcaaactgaaaagttatatgaaacagccattgattatgct
gagatttcaaaagatgatgtatgttttgacttgtattgtggtataggtactatatcatta
atggcagcaagaaaagcaaaaaaggtaataggggtagaaatagtagagcagtcaatacaa
gatgctaagaaaaatgcaataaataacaatataagtaatacagaattctttacaggcaag
gtagaagaagttttacctaaactttataaaaagaatataagaccaaatataattatagta
gacccaccaagaaagggttgtgaaaaggaagtactaaaaacaatttcagatataaaccca
gaaaaaatagtttatgtatcatgcaacccagcaacactagcaagagatgtgaaactacta
gtagacagtggctatattctaaaaaaaattcaaccagtagatatgttcgggcatagcacg
catgtggagacagtagtacgactatgtcgtcaaaaccattga
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