Sedimentibacter sp. zth1: JYG23_10250
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Entry
JYG23_10250 CDS
T07110
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYG23_10250 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_10250 (uvrB)
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYG23_10250 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JYG23_10250 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
DUF6262
AAA_22
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
QSX05067
LinkDB
All DBs
Position
complement(2115325..2117295)
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AA seq
656 aa
AA seq
DB search
MGKFKIHSEYKPTGDQPQAIDDLVKGINNNLKFQTLLGVTGSGKTFTMANIIEKVQKPTV
VLAHNKTLAAQLCSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAINDEIDK
LRHSATASLFERKDVIIVASVSCIYGLGSPIDYENLVISLRPGMQKDRDEVIKKLVEIQY
KRNDISFTRGNFRVRGDVLEIFPASSSESAIRVEFFGDEIERITEINTITGEMLGRRNHI
SIFPASHYATTEENIKRAVVSVKEELKDRLKYFESENMLLEAQRIEQRTNYDLEMLEEMG
YCNGIENYTRHINNLPEGARPFTLLDYLPKDFLMFIDESHVSVPQVRGMFNGDRARKQTL
VNYGFRLPSALDNRPLKFDEFEQIIHQVVFVSATPGPFEKEHGQNVAEQIIRPTGLIDPP
ISVRPVSNQIDDLMKEIRAIVEKGERVLVTTLTKKMAEDLTFYFKNAGIKVRYLHSDIDT
IERMEIIRDLRIGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTVGRA
ARNVNGRVIMYADKVTRSMNRAITETERRRKIQNEYNIEHGIIPKSIKKGVRDVIEATKV
AEEKEDYKVNKKQDINVSELLIDLEKEMYKAAEDLEFERAAQIRDEIKKLEKQYNL
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatttaaaattcattctgaatataagcctacaggagaccaaccacaggctata
gacgatttagtaaagggtataaataacaatttaaaatttcaaacgttattgggtgttact
ggctcaggaaagacatttacaatggcaaatatcatcgagaaagtgcaaaagcctactgtt
gttttagcacataataaaactttagcagcgcaactatgctcggagtttaaagaatttttt
ccggaaaatgcggtagagtattttgtaagctattatgattactatcagccagaggcatat
gtgccaagtagtgatacttttatagagaaagattctgctataaatgatgaaatagataag
cttagacactctgctacagcttctcttttcgaaaggaaagacgttataatagtagctagt
gtatcttgtatatacgggcttggtagtccaattgattatgaaaatttagtcatttctctt
agaccaggaatgcaaaaagatagagatgaagttatcaaaaaactcgtagaaattcaatat
aaaagaaacgatattagctttactcgtggtaattttagagtaaggggagatgttttagag
atatttcctgcatcatcttctgaaagtgctataagagttgagttttttggtgatgaaata
gaaagaataactgaaattaacactattacaggtgaaatgctgggtagaagaaatcatatt
tctatatttccggcttcacactatgcaactactgaagaaaatataaaacgtgcagtagtt
agcgttaaagaagaattaaaggatagattaaaatattttgaaagtgaaaatatgcttcta
gaagcacagcgtatagagcaaaggacaaattatgatttggaaatgctagaagaaatggga
tattgcaatggtatagagaactatacaagacatattaacaatttaccagaaggggcaaga
ccatttactttactagattatttaccaaaagattttttgatgtttatagatgaatcccat
gttagtgttccacaagttagaggaatgtttaatggtgatagagcgagaaagcagacttta
gttaactatggttttagattgccttcagcacttgataatagacctctaaaatttgatgaa
tttgaacagatcatacatcaagttgtatttgttagcgcaacacctggaccattcgaaaaa
gagcatggtcaaaacgttgctgagcagattattagaccaactggattaattgacccacct
atatcagttagaccagttagtaatcaaattgatgacttaatgaaggaaatacgagctatt
gttgaaaaaggtgaaagagttttagttacaacactaactaaaaaaatggcagaggattta
acattctattttaaaaatgctggtataaaagttcggtacttacattcggatatagataca
attgaaagaatggaaattattagagatttaagaataggtaaatttgatgtattggtagga
ataaatctattgagagagggattagatttacctgaggtttcactcgtagcaattcttgat
gcagataaagaaggatttttgcgttctgaaacatcgttgattcagacagttggtagagct
gctcgtaatgttaatggtagagttataatgtatgctgataaggttactagatcaatgaat
agagcaataacagaaacggaaagaagaagaaaaatacaaaatgaatataacatagagcat
ggaattatccctaaatctattaaaaagggagttcgtgatgttattgaagcaactaaggtt
gcagaagaaaaagaagattataaagttaataaaaaacaagatataaatgtttcagaactt
ctaatagatcttgaaaaagaaatgtataaggctgcagaagatttagaattcgaacgagca
gctcaaattagagatgaaattaaaaaattagaaaagcagtataatctataa
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