KEGG   Sedimentibacter sp. zth1: JYG23_13285
Entry
JYG23_13285       CDS       T07110                                 
Name
(GenBank) HD domain-containing protein
  KO
K03698  3'-5' exoribonuclease [EC:3.1.-.-]
Organism
sedz  Sedimentibacter sp. zth1
Brite
KEGG Orthology (KO) [BR:sedz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sedz03019]
    JYG23_13285
Messenger RNA biogenesis [BR:sedz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     JYG23_13285
SSDB
Motif
Pfam: HD Cas3_HD HDOD
Other DBs
NCBI-ProteinID: QSX05628
UniProt: A0A974XCE0
LinkDB
Position
2788562..2789458
AA seq 298 aa
MKNLYSKDIKKDEKRNISLMLMKKVFRENEKTIAYLGDKTGEVKSEIIDENDELLVGDVL
ELVGILDRIFVVESYKKILEYDVEDYLSCIERPIEEIMDEINLITNREIISKECKALNDY
FFNDSDFLNKFKKGIAGVRQHHNYRGGLAEHTLNVMYLSTILAKRYECNNREITILGAKL
HDIGKIEELFVDGPFSYTLRGEIEGHIVIGVSMLEEAFKAEPELYNEDFKERMKGCIIQH
HGKMEYGSPRQLNMEEAYIVHYADYIDATMNKISQIKKDVAPGTWSEYDRRIGTKLYL
NT seq 897 nt   +upstreamnt  +downstreamnt
atgaaaaacttatattctaaagatattaaaaaagatgagaaaagaaatatttcattaatg
ttaatgaaaaaagttttcagagaaaatgaaaaaaccattgcttacttgggtgataaaact
ggtgaggttaaatctgagattatagatgagaacgatgaattgctagtgggtgatgtacta
gaattggtaggtattttggatagaatctttgttgttgagagttataaaaaaatattggaa
tatgatgtagaagattacttatcatgtattgaaaggcctatagaagaaattatggatgag
attaatcttattaccaatcgagaaattattagtaaagaatgtaaagctcttaatgattat
ttttttaatgattcagattttcttaataaattcaaaaaaggtatagccggtgtgcgtcaa
catcataactataggggtggtttggctgagcatacattaaacgtaatgtatttgtctacg
atcttagctaaaagatacgaatgtaacaatagagagattacaatactcggagctaagctt
catgacataggtaaaattgaagaactctttgttgatggtcctttttcttatactttgcgt
ggagaaattgaaggacacatagtcattggagtttctatgcttgaggaagcttttaaagct
gaaccagaattgtataatgaagatttcaaagaaagaatgaaaggttgtatcatccaacat
catggaaaaatggaatatggctcaccaagacaattaaatatggaagaagcctacattgta
cattatgccgattatatagatgcaactatgaacaagatttcacaaataaaaaaagatgtt
gctcctggaacttggtctgaatatgatagaaggataggtacaaaactctatctttaa

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