Sedimentibacter sp. zth1: JYG23_14130
Help
Entry
JYG23_14130 CDS
T07110
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_14130 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_14130 (recQ)
03400 DNA repair and recombination proteins [BR:
sedz03400
]
JYG23_14130 (recQ)
Enzymes [BR:
sedz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYG23_14130 (recQ)
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYG23_14130 (recQ)
DNA repair and recombination proteins [BR:
sedz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JYG23_14130 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QSX05783
UniProt:
A0A975AFB2
LinkDB
All DBs
Position
complement(2997143..2998990)
Genome browser
AA seq
615 aa
AA seq
DB search
MNINDAKKALKTYFGYSNFREGQEQIINSILCQRDSLGIMPTGAGKSVCFQIPAMLFSGI
TIVISPLISLMKDQVNGLNELGINAAYLNSSLTNSQYLSTIENIKNYKYKIIYVAPERLL
TDNFINCCLELNISMITIDEAHCISQWGQDFRPSYTKIIDFINNLKIKPIISAFTATATQ
KVKEDITSILNLKNPFVLVTGFDRKNLFFEVQKPKDKYSYLLNFLKKTNDENGIVYCSTR
ETVEKVCEYLKVHKYKATRYHAGLADKERKQNQDDFLYDKSKIMVATNAFGMGIDKSNVS
FVVHFNMPKDIESYYQEAGRAGRDGSEAHCIILYSGQDLVINSFMIEHSKDRIYEDNEIE
KRLKSKDRERLKIMNMYCQTKECLRKFILNYFGEQANDNCQKCINCITKYENVDITLAAQ
KIISCILRVKENYGTKMIINILRGSKNKRILTLGFDKLSTYGIMNESEIYIRDIINYLII
NNYLRVTNDEYPLIKLENKARKFIKDKELLTMKICAEKDIEEIGKTKSSSKSKDVLDIEI
DDNLLIKLKALRLEIASEHGVPAFVVFADSALKDMCNKKPVNETQFLEVSGVGQVKLERY
GKLFLDVIKSYLNKE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaatattaatgatgcaaaaaaagctttaaaaacctattttggatatagtaattttaga
gaaggtcaagagcaaattataaattcaatattatgtcaaagagattctttgggtataatg
ccaacaggagcaggaaaatccgtctgttttcaaatccctgctatgttatttagtggtata
actattgtaatatctccacttatatctttgatgaaagatcaagtaaatggacttaatgaa
ctaggtataaatgccgcttatcttaacagttccttgacaaatagccaatatttatccact
atagaaaacattaaaaattataaatataaaataatatatgtagcaccagaaagattatta
actgataattttattaactgttgtttagaacttaatatttcaatgattacaattgatgaa
gctcattgtatatcacagtggggtcaagatttcagacctagttatacaaaaattattgat
tttattaacaatttgaaaataaaacctataatttctgcttttactgcaactgctactcaa
aaagtaaaagaagatataacttcaatattaaatttaaaaaatccatttgttttagttact
ggttttgatagaaaaaacttattttttgaagttcaaaaacccaaggacaaatatagttat
ttattgaattttttgaagaaaacaaatgatgaaaatggtattgtttattgctctactaga
gaaaccgttgaaaaagtttgtgaatatttaaaagtacataaatataaagcaacaagatat
catgctgggttagcagataaagaaagaaaacaaaatcaagacgattttctatatgataaa
tctaaaatcatggttgcaaccaatgcttttggtatgggtatagataagtcaaatgtatcc
tttgttgtacattttaatatgccaaaagatattgaaagctactatcaagaagctggtaga
gccggtagagatggcagtgaggctcattgtataattctttacagtggtcaagatttagta
atcaactcttttatgattgagcattctaaagatagaatttatgaggataatgaaatcgaa
aaaagattaaaatcaaaagaccgtgaacgtttaaaaataatgaatatgtactgtcaaaca
aaagaatgtcttagaaaatttatacttaattattttggtgaacaagcaaatgataattgt
caaaaatgcataaattgcataacaaaatatgagaatgttgatattactctggcagcacaa
aagataatttcctgcatcctaagagtcaaagagaattacggaactaaaatgataatcaat
atattgaggggaagtaagaacaaaaggattttaactttaggttttgacaaactttctacc
tatggaataatgaatgaatcagaaatttatattagagacataattaattatttaattata
aataattatttaagagttactaatgacgagtaccctcttataaagttagaaaataaagca
aggaaatttataaaagataaagaattacttacaatgaaaatttgtgcagaaaaagacatc
gaagaaattggaaaaacaaaatcatctagtaaaagcaaagatgttttagatatagagatt
gacgataatctattaattaagcttaaagcattgagactagaaatagcttctgaacatggc
gtacctgcatttgtagtctttgctgatagtgctcttaaggatatgtgtaataagaagcct
gttaatgaaacacaatttctagaagtttcaggtgttggacaagtaaagctcgaaagatat
ggtaaattgtttttagatgtaataaaatcatatttaaataaagaataa
DBGET
integrated database retrieval system
