Sedimentibacter sp. zth1: JYG23_14340
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Entry
JYG23_14340 CDS
T07110
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sedz
Sedimentibacter sp. zth1
Pathway
sedz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYG23_14340 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sedz03021
]
JYG23_14340 (rho)
03019 Messenger RNA biogenesis [BR:
sedz03019
]
JYG23_14340 (rho)
Transcription machinery [BR:
sedz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JYG23_14340 (rho)
Messenger RNA biogenesis [BR:
sedz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JYG23_14340 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
ATPase_2
AAA_22
AAA
NACHT
ABC_tran
AAA_25
AAA_24
SAP
Motif
Other DBs
NCBI-ProteinID:
QSX05823
LinkDB
All DBs
Position
3042228..3043565
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AA seq
445 aa
AA seq
DB search
MNLTDLSNMKLPELKELAQKKGILNIYKYKKSELIEEILKEIESIKKQEEKEKVKKDLPD
RLNEEVENSSDVLEISGILESHQDGYGFLRTNNYLTSENDVYISPSQIRRFQLKTGDKVS
GITRSPKQGEKFKALLYVKKVNDLDPELSRNRKNFDTLTPIYPNNRIRLESNSKDIAMRI
IDLVSPIGRGQRGMIVAPPKAGKTTLLKNIANNISNNYPEIEIIILLIDERPEEVTDMKR
SVNADVVYSTFDELPKNHIKVAEIVLERAKRLVEHGKDVVILLDSITRLARAYNLTIPQT
GRTLSGGLDPGALYSPKRFFGAARNIENGGSLTILATALVETGSRMDDVIFEEFKGTGNM
EVHLDRKLSERRVFPALDINKSGTRKEDLLLTSKELQTIWQIRKALSNFHTVDVTERLLD
GLLKTKSNNEFIHEAATIFNIEKQK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttaactgatttatcaaatatgaagttaccagaattaaaagaattagcacaaaaa
aagggaattttaaatatttacaagtataaaaagagtgaactaatagaagaaattttaaaa
gaaatagaaagcattaaaaaacaggaagaaaaagaaaaagtaaaaaaggatttgcctgat
agattgaatgaagaagttgaaaatagtagcgatgtgcttgaaatttcaggtatactagaa
tctcatcaagatggatatggctttttaagaactaataattatctaaccagcgaaaacgat
gtatatatttctccttcacaaattaggagatttcaattaaaaactggtgacaaggtaagt
ggtataacacgctctccaaaacaaggtgaaaaattcaaagcattattatatgtgaaaaaa
gttaatgatttagatcccgaattatctagaaaccgtaaaaattttgatactttaacacct
atttatccaaataatagaataaggttagaatcaaattccaaagatattgcaatgagaata
attgatttggtttcacctattggaagaggacaaagaggtatgatagttgctcctcctaaa
gcaggaaaaactacattgttgaaaaatattgcaaataatatatcaaataattatcctgaa
atagaaataatcattttacttatagatgaaagaccagaggaagttacagatatgaaaaga
tctgtaaatgcagatgttgtatattctacatttgatgagcttccaaaaaatcatataaaa
gtggcagaaattgttctagaaagagcaaaaagattagtcgagcatggaaaagatgtagta
atattattagatagtataacaagattggcaagagcatataacttaacaattccacaaaca
ggaagaacattgtcaggtggtcttgatcctggagcattatatagtccaaaaagatttttc
ggtgctgctagaaatattgaaaacggtggtagcttaactattctggccactgctttagta
gagacaggcagtaggatggatgatgttatattcgaagaattcaagggaacaggaaatatg
gaggttcacttagacagaaagttatctgaaagaagagtattccctgcacttgatattaat
aagtcgggtactagaaaagaagatttattattgactagcaaagagttgcagacaatttgg
caaattagaaaagcacttagtaattttcatactgtagatgtaactgaaagattattagat
ggattattaaaaactaaatctaataacgaatttatacatgaagcagctacaatatttaac
atagaaaaacaaaaatga
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