Salmonella enterica subsp. enterica serovar Newport SL254: SNSL254_A1758
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Entry
SNSL254_A1758 CDS
T00739
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
see
Salmonella enterica subsp. enterica serovar Newport SL254
Brite
KEGG Orthology (KO) [BR:
see00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
see03019
]
SNSL254_A1758 (hrpA)
Enzymes [BR:
see01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SNSL254_A1758 (hrpA)
Messenger RNA biogenesis [BR:
see03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SNSL254_A1758 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
AAA_16
ResIII
PhoH
SLFN-g3_helicase
NTPase_1
DUF6145
Motif
Other DBs
NCBI-ProteinID:
ACF65382
UniProt:
A0A0H3BW36
LinkDB
All DBs
Position
complement(1727687..1731589)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQ
VALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDVDKQEYTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW
HWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIW
SFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWNEAGFTALHEK
VRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMNGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatctacgttgacgcttcaggtgttacagcagcggctggatgcactgatg
ctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgtaaagaaagtaaaaaatcct
gatgcgcaacaggccattttccagacgatggcgaaagaaattgaacaggctgcggcgcaa
gtcgccctccgcgaagcggcgcgcccctcaatcacttatccgcaaaatctgcctgttagc
cagaagaaacaggacattctggaagcggtccgcgatcatcaggtagtgatcgtggcaggg
gaaaccggttccggtaaaaccacccagttgccgaaaatttgtatggagctgggacgcgga
attaaaggacttattggacatactcagccgcgtcgcctggcggcgcgcaccgttgctaac
cgcattgccgaagagttgcaaacggagcctggcggctgcatcggctataaagttcgtttc
agcgatcatgtcagtagcaacaccatggtcaaactgatgacggacggtatcctgctggcg
gaaatccagcaggacaggctattgatgcagtacgacaccatcattattgatgaagcgcat
gaacgcagcctgaatattgacttcttgctcggctatctgaaagagcttctgccgcgtcgc
cccgatctgaaagtgattattacctctgcgaccatcgacccggaacgcttctcgcgccac
tttaataacgcgccgattatcgaagtctctggccgaacgtatcccgtagaggttcgttat
cgccccatcgtggaagaggctgacgacactgaacgcgatcagctacaggcaattttcgac
gctgttgatgaactggggcgtgaaagtcccggcgatatcctgatttttatgagcggagag
cgggaaatccgcgataccgccgacgccctgaacaagctgaacttacggcataccgaagtg
ttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgcgttttccagtcgcacagc
ggacgccgtatcgtgctggcgactaacgtggcggaaacctcgctgacggtgccgggtatc
aaatatgtgatcgatcctggcactgcgcgcatcagccgctacagctaccgcactaaagtg
cagcgcctgccgattgaaccgatctcacaggcttccgccaaccagcgtaaagggcgttgc
gggcgcgtatcggaagggatttgcattcgtctgtattcggaagatgactttttgtcacgt
ccggaatttaccgacccggaaattctacgtaccaacctggcgtcggttattttgcagatg
accgccctggggctgggtgacattgccgccttcccgtttgtcgaagcgccggataagcgc
aatattcaggatggcgtgcgtttgttggaagagctgggggcgattaccgccgacgaacag
caaacggcatataagctgacgccactgggccgacaattatcccagttgccggtcgacccg
cgcctggcgcgtatggttctggaagcgcaaaaacatggctgtgtgcgcgaagcgatgatc
attacttccgcactctctattcaggatccgcgcgagcgcccagtggataagcagcaggct
tccgatgagaaacaccggcgtttccatgataaggagtccgattttctggcgtttgttaac
ctgtggaattacctcggcgagcaacaaaaggccctgtcgtcgaatcaattccgccgtctg
tgtcgcaccgactatctgaactatttacgcgtgcgtgagtggcaggatatctatacccaa
ctgcgtcaggtggtaaaagaactggggattccggtaaacagcgaacccgcagagtaccgg
gaaattcacgttgcgttgttaacgggactgttgtcgcatatcgggatgaaagatgtcgat
aaacaagagtacaccggcgcgcgtaacgcccgattctctattttccccggttccggttta
ttcaaaaaaccgccgaaatggacaatggtcgcagaactggtggagaccagccgtttgtgg
gggcgcatcgctgcccgcattgagccagaatgggtggaaccggtagcccagcacctgatt
aaacgttcatatagcgaaccgcactgggagcgggcgcaaggcgcggtgatggcgacggaa
aaggttactgtctacggtctgccgattgtcgccgcgcgcaaagtgaattacagccagatt
gacccggcgttgtgtcgcgagttgttcatccgccatgcgctggtggagggggactggcaa
acccgtcatgccttcttccgtgagaatctaaaattgcgtgcggaagtcgaggaacttgag
cacaaatctcgccgccgcgatatcctggtggatgacgataccctgtttgagttttatgac
cagcgtattagccatgacgttatttccgcccgccactttgatagttggtggaaaaaaatc
agccgcgagacgccggatctgctcaactttgaaaaaagtatgttgattaaagaaggcgcg
gaaaaaatcagcaaactggattacccgaatttctggcaccagggcaatctcaagctgcgt
ttgagctatcagtttgaaccgggcgcggatgctgacggcgtgaccgtccatattccgttg
ccgctacttaaccaggttgacgagagcggttttgaatggcagatcccggggctgcgccgt
gaattagttattgcgctgattaaatcgttgccaaaaccggtacgtcgcaactttgttccg
gcgccaaactatgctgaagcgtttttaggtcgcgtaacgccgctggagctgccgctgctg
gacgctctggagcgtgaactgcgccggatgaccggcgtcacggtcgatcgggaagactgg
cattgggatcaggtgcccgagcatctgaaaatcacgtttcgcgtggtgaatgacaaaaac
aagaaactgcaggaagggcgttcgctcgccgagcttaaaaatgcgctgaaaggcaaagtg
caggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatctgg
agtttcggcgagctgccggaaagctacgaacagaaacgcggtaattataaagtgaaggcg
tggccggcgttagtggatgagcgtgacagcgtcgctatcaaattgtttgataatccgctg
gaacaacaacaggcgatgtggtgcggtttacgccgtctgttgttgctcaatattccttca
ccgattaagtatctgcatgagaaattgccgaataaagccaagctggggctgtactttaac
ccgtacggcaaagtactggagttgattgatgactgtatcgcctgcggggtagataagctg
atagatgccaacggcggaccggtgtggaacgaagcaggtttcaccgcgctgcacgaaaag
gtacgcgccgagctgaatgatactgtggtggatatcgcgaagcaggttgagcggatcctg
acgaccgtattcaatatcaataagcgtctgaaagggcgggtggatatgagcatggcgttg
gggctttccgatatcaaggcgcagatgaacggcctggtataccgtggttttgtgactggc
aacggctttaaacgtctcggcgatacgctgcgttatctgcaggcaattgaaaagcggctg
gagaaactggctgtcgatccgcaccgcgatcgggcgcaaatgctgaaagtcgaaagcgtc
cagcaggcgtggcaacaatggataaataaactgcctccagcgcgtcgcgaagatgatgat
gttaaagagatccgttggatgattgaagaactgcgtgtcagttatttcgcccaacagctc
ggtacgccttatcctatttccgataagcgtattttacaggccatggatcagattacggcc
taa
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