Salmonella enterica subsp. enterica serovar Newport SL254: SNSL254_A3536
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Entry
SNSL254_A3536 CDS
T00739
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
see
Salmonella enterica subsp. enterica serovar Newport SL254
Pathway
see03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
see00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNSL254_A3536 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
see03019
]
SNSL254_A3536 (deaD)
03009 Ribosome biogenesis [BR:
see03009
]
SNSL254_A3536 (deaD)
Enzymes [BR:
see01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SNSL254_A3536 (deaD)
Messenger RNA biogenesis [BR:
see03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SNSL254_A3536 (deaD)
Ribosome biogenesis [BR:
see03009
]
Prokaryotic type
rRNA helicases
SNSL254_A3536 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ACF64932
UniProt:
A0A0H3BTE0
LinkDB
All DBs
Position
complement(3428245..3430134)
Genome browser
AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGD
GRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcgccaacccgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctgtacggcggtcagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcactta
aaacgcggcaccctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgattatcttcgtacgtaccaaaaacgcgaccctggaa
gtagcagaagcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatc
gccaccgatgttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactac
gatatcccgatggactccgagtcctacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgcgccggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggt
aaacgccgtctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgctgaaggcgaagagctggat
ctcgaaacgctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgattctg
ccgccggatgcgccgatgcgtcccaagcgtgaattccgtgaccgtgacgaccgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggcgatcgtgaagatcgtccgcgtcgtgaacgt
cgtgacgttggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaa
gttcgtcatatcgtgggcgctatcgctaacgaaggcgacatcagcagccgttacattggt
aacattaagctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaa
gtgttgcagcacttcacgcgtacccgcattctgaacaagccgatgaatatgcagctgttg
ggtgatgctgttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggc
gagcgtcgtgaaggcggtcgtaatttcagcggcgaacgtcgtgaaggcggtcgtggtgat
ggtcgtcgcttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctacc
ggtcgccgtcgtttcggcggtgatgcgtaa
DBGET
integrated database retrieval system
