Salmonella enterica subsp. enterica serovar Newport SL254: SNSL254_A3638
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Entry
SNSL254_A3638 CDS
T00739
Name
(GenBank) cyclic diguanylate phosphodiesterase (EAL) domain protein
KO
K18765
RNase E specificity factor CsrD
Organism
see
Salmonella enterica subsp. enterica serovar Newport SL254
Brite
KEGG Orthology (KO) [BR:
see00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
see03019
]
SNSL254_A3638
Messenger RNA biogenesis [BR:
see03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SNSL254_A3638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
ACF63256
UniProt:
A0A0H3BR12
LinkDB
All DBs
Position
complement(3526908..3528848)
Genome browser
AA seq
646 aa
AA seq
DB search
MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQATATAIDTHLVTHDIVS
LTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSDMYRELVVPLIKHPGMSLR
LVYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQRQLSGQELLEIRSTRILNGER
GANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDTLIRSYAAQDTKTGLGNRLFFDN
QLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGNQAEEQMFMLINLLSTFIMRYPGSL
LARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDALPANKMLDRDDMVHIGICAWRSGQST
EQVMEHAEAAARNAALQGGNSWAIYDDTLPEKGRGNVRWRTLIEQMLNRGGPRLYQKPAV
TREGRVHHRELMCRIYDGKEEVSSAEYMPMVLQFGLSEEYDRLQISRLITLLGYWPDENL
AMQLTVESLIRPRFQRWLRDTLMQCEKSQRNRIIIELAEADVCQHISRLQPILRLVNALG
VRVAVTQAGLTLVSTSWIKALNVELLKLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQV
YATGVRSRGEWQTLTKRGVAGGQGDFFASSQLLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcttttatcacgctgctcacggggttaacgatcttc
gtgactctgataggttgctcgctaagcttttataacgccgtacagtataagtatgtcagc
cgtgtgcaggcgacggcaacagccattgatacgcacctggtgacccatgatattgtctcg
ctgacgccgcaaatcgacgagctcatgattgcttccgatattgtgcgtgtcgatctgttg
cagggggagcgcagcgtctacagccattctcgcgccagaggttatcggccagccggcacc
agcgacatgtatcgcgagctggtcgtaccgctgataaaacatccaggaatgtcgctacgt
ctggtttatcaggacccgatgggtaactattttcactcactgatcaccacggcgccgctg
acgctggcgatcggttttatcgttctgattttgtttttatcggtgcgctggctgcagcgg
cagctttccgggcaggagcttctggaaattcgctccacgcgtattctgaacggcgaacgt
ggggcgaatgtccgcggttctgtttacgaatggccggcgcgcaccagtagcgcgcttgat
gtattgctttccgaaattcagtttgctcacgaacagcgtagtcgcctggacaccctcatt
cgctcctacgccgcgcaggacaccaaaaccgggctcggtaaccgtctgttttttgataac
caactggcgacgctgctggaagatcaggaaaaagtgggagtgcatggcgtggtgatgatg
atccgcttgccagatttcaatcttctgcgcgacagcctgggaggcaatcaggcggaagag
cagatgtttatgcttatcaatctgctatcgacatttattatgcgttacccaggctcgctg
ctggcgcgttatcaccgcagcgactttgccgtgctgctaccgcatcgaacgctgaaagaa
gcggaaagtattgccggacaacttttaaaagctgtcgatgcgctaccggctaacaaaatg
ctcgatcgtgacgatatggtacatatcggcatttgcgcctggcgcagcggacagtccacc
gagcaggtgatggaacatgctgaagccgcggcgcggaacgccgccctgcaggggggaaat
agctgggctatctacgacgacacgctgccggaaaaagggcgcggcaatgtgcgctggcgc
acattgattgagcagatgctgaaccggggcggaccgcgactttatcaaaaaccggcggtc
acgcgagaaggtcgcgtacatcatcgggaattgatgtgtcgcatctatgacggtaaagaa
gaggtgagctcggcggagtatatgccgatggtgttgcaatttggtttatcggaagagtat
gacagattacaaattagccgcctgattacgttgctgggctactggccggatgaaaatctg
gcaatgcagttgacggttgagtcgctgattcgtccgcgttttcagcgctggttgcgcgat
acgttaatgcagtgtgaaaaatcacagcgaaatcgcataattattgaacttgcggaggca
gatgtttgtcaacacatcagccggttacaacccatccttcgcttagtcaatgcgcttggc
gttcgggtggcggtgacacaggcgggtttgacgctggttagcacgagctggattaaagcg
ctcaatgtggaattactcaagctgcatccgagtctggtcagaaacattgagaagcgaacg
gaaaaccagcttctggttcaaagtctggtagaggcctgcgcgggcacgcctacgcaggtt
tacgcgacgggcgtccgttcgcgcggcgagtggcagacgctgacaaaacgcggcgtggct
ggcgggcagggtgatttttttgcctcctcccaactacttgacacaaacgtgaaaaaatat
tcgcaaagatactcggtttaa
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