Salmonella enterica subsp. enterica serovar Bareilly: SEEB0189_002275
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Entry
SEEB0189_002275 CDS
T02739
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
seeb
Salmonella enterica subsp. enterica serovar Bareilly
Brite
KEGG Orthology (KO) [BR:
seeb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seeb03016
]
SEEB0189_002275
Enzymes [BR:
seeb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SEEB0189_002275
Transfer RNA biogenesis [BR:
seeb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SEEB0189_002275
Prokaryotic type
tRNA splicing ligases
SEEB0189_002275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGQ57667
UniProt:
A0A4D6PCH5
LinkDB
All DBs
Position
411786..413000
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AA seq
404 aa
AA seq
DB search
MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRDV
GAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattgatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcacctg
ggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccattggtacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctaccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcgcaa
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggatgagatcaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatttatgtgacgcgtaaaggggcggtttcggcg
cggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagaatcgttctgttcgtgcagccacggcgccgggcgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagacattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacaccctgcggcaggtggtg
tgcgttaaaggatag
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