Salmonella enterica subsp. enterica serovar Cubana: CFSAN002050_03595
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Entry
CFSAN002050_03595 CDS
T02734
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
seec
Salmonella enterica subsp. enterica serovar Cubana
Pathway
seec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
seec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFSAN002050_03595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seec03021
]
CFSAN002050_03595
03400 DNA repair and recombination proteins [BR:
seec03400
]
CFSAN002050_03595
Enzymes [BR:
seec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFSAN002050_03595
Transcription machinery [BR:
seec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFSAN002050_03595
DNA repair and recombination proteins [BR:
seec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFSAN002050_03595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGQ71575
LinkDB
All DBs
Position
429123..433346
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
TPQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcatccccgactgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgttgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcttatgtggttatcgaaggcggtatgactaacctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagccttcgttcagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgcctccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaaactggaactgcgtggcctggccaccactatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgctgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaaagatgaaaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcgtccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatctctgaggcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggccaggaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagttg
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaactgcgaactccggttatctgacccgtcgtctg
gttgacgtcgcgcaggatctggtggtgaccgaagatgactgtggtacgcacgaaggtatc
ctgatgaccccggttatcgagggtggcgacgtgaaagagccgctgcgtgaccgcgttctg
ggtcgtgtgacggcggaagatgtgctgaaaccgggtaccgcggacattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcaaactccgttgacgccgtt
aaagtgcgttccgttgtatcctgcgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggttaagaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttctcgtaacacc
gaactgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttatggc
gctgtcatggcgaaaggtgatggcgagcaggttgccggcggcgaaaccgtggcaaactgg
gacccgcacaccatgccggttatcactgaagtgagtggtttcatccgcttcactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaactgaccggtttgtcttcgctggtg
gttctggattcggctgaacgtactaccggtggtaaagatctgcgtccggcgctgaaaatc
gttgatgctcagggtaatgacgttctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggccattctggcggaaatcgca
ggtatcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggtgattacgccggtt
gatggtagtgacccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggggaacgtgtagaacgtggtgatgtgatttccgatggtccggaagcgccgcacgacatt
ctgcgtctgcgtggcgttcatgctgtgacgcgttacattgttaacgaagttcaggatgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagcgccggtagttccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgctaaccgcgagctggaagcgaacggcaaagtgggggct
accttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttacgcgtaccaccaggatcgtatgcgccgtcgcgccgcgggcgagcagccagca
acaccgcaggtcactgcggaagatgcatctgccagcctggcagaactgctgaacgcaggt
ctgggcggttctgataacgagtaa
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integrated database retrieval system