Salmonella enterica subsp. enterica serovar Cubana: CFSAN002050_10680
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Entry
CFSAN002050_10680 CDS
T02734
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seec
Salmonella enterica subsp. enterica serovar Cubana
Pathway
seec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFSAN002050_10680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seec03019
]
CFSAN002050_10680
Enzymes [BR:
seec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFSAN002050_10680
Messenger RNA biogenesis [BR:
seec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFSAN002050_10680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGQ72625
LinkDB
All DBs
Position
1907656..1909014
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AA seq
452 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGRGRGQNQGGAGRSQQPRRQDSGA
AKAKPKPRTGEGKPAGDKARPPRRPRRITPAQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctgggattaaaccctgatatcctgcgcgccattgccgagcagggt
taccgtgaacctacccctattcagcaacaggcgattcccgccgtgctggaaggccgcgat
ctgatggccagcgcccagactggaaccggtaaaacggcgggttttaccctgccattgttg
cagcatctgattacccatcagccgcacgctaaaggtcgtcgcccggtgcgcgcgttgatc
ctcacgccaacccgcgagctggcggcgcaaattggcgaaaacgtcagagattacagtaaa
tatctcaatattcgctcgctggtggtatttggcggcgtaagcatcaatccgcagatgatg
aaactgcgcggcggcgtggatgtgctggtggcgacgccgggacgtctgctcgacctggaa
catcaaaatgccgtgaagctggatcagattgagattctggtactggatgaagccgaccgt
atgctggatatgggcttcattcacgacattcgtcgcgtgctggcgaaactgccggcgaag
cgtcagaatctgctgttctccgccacgttctccgacgacatcaaagcgctcgccgaaaag
ctgttgcgcaatccgctggaaatcgaagtggcgcgccgcaacacggcctcagagcaggtg
acgcagcacgtgcactttgtcgataaaaaacgtaagcgcgaactgctgtcacaaatgatt
ggccaaggcaactggcagcaggtgttggtcttcacccgcaccaagcatggcgcgaaccat
ctggcggaacagcttaataaagacggtattcgcagcgcggcgatccacggtaataaatcg
cagggcgcacgtacccgcgcgctggccgattttaaatccggcgatattcgcgtgctggta
gcgacggatattgcggcgcgtggtctggatattgaagagctgccgcacgtggtcaactat
gagctgccgaacgtgccggaagattatgtacaccgtattggccgtaccggtcgcgcggcg
gcaactggcgaggcgctgtcgctggtctgtgttgacgagcataaactgttgcgtgatatc
gaaaagttgctgaaaaaagagatcccacgcattacgacgccgggctatgagccggacccg
tcgattaaagcggagccgattcagaatggccgtcagcagcgcggcggcggtcgtggacgc
ggacaaaatcaggggggagcggggcgtagtcagcagccgcgacgtcaggatagcggggcg
gcgaaggcgaaaccaaaaccgcgcacaggcgaggggaaacccgctggcgacaaagcacgt
ccgccgcgtcgcccgcgcagaatcacgcctgcccagtaa
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