Salmonella enterica subsp. enterica serovar Heidelberg 41578: SEEH1578_03675
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Entry
SEEH1578_03675 CDS
T02736
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
seeh
Salmonella enterica subsp. enterica serovar Heidelberg 41578
Brite
KEGG Orthology (KO) [BR:
seeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seeh03016
]
SEEH1578_03675
Enzymes [BR:
seeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SEEH1578_03675
Transfer RNA biogenesis [BR:
seeh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SEEH1578_03675
Prokaryotic type
tRNA splicing ligases
SEEH1578_03675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGQ62338
LinkDB
All DBs
Position
complement(618569..619783)
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AA seq
404 aa
AA seq
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MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRDV
GAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcacctg
ggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcgcag
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagataaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggcggtttcggcg
cggcgcggtgagttcggtatcattcctggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacgccctgcggcaggtggtg
tgcgttaaaggatag
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