Salmonella enterica subsp. enterica serovar Heidelberg 41578: SEEH1578_17455
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Entry
SEEH1578_17455 CDS
T02736
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
seeh
Salmonella enterica subsp. enterica serovar Heidelberg 41578
Brite
KEGG Orthology (KO) [BR:
seeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seeh03019
]
SEEH1578_17455
Enzymes [BR:
seeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SEEH1578_17455
Messenger RNA biogenesis [BR:
seeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SEEH1578_17455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_16
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AGQ65076
LinkDB
All DBs
Position
complement(3527904..3531749)
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQVALREAARPSITYPQNLPV
SQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTAEALNKLNLRHTE
VLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRL
WGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEFY
DQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLKITFRVVNDK
NKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCIACGVDKLIDANGGPVWNEAGFTALHEKVRAELNDTVVDIAKQVERI
LTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMDQITA
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgtaaagaaagtaaaaaat
cctgatgcgcaacaggccattttccagacgatggcgaaagaaattgaacaggctgcggcg
caagtcgccctccgcgaagcggcgcgcccctcaatcacttatccgcaaaatctgcctgtt
agccagaagaaacaggacattctggaagcggtccgcgatcatcaggtagtgatcgtggca
ggggaaaccggttccggtaaaaccacccagttgccgaaaatttgtatggagctgggacgc
ggaattaaaggacttattggacatactcagccgcgtcgcctggcggcgcgcaccgttgct
aaccgcattgccgaagagttgcaaacggagcctggcggctgcatcggctataaagttcgt
ttcagcgatcatgtcagtagcaacaccatggtcaaactgatgacggacggtatcctgctg
gcggaaatccagcaggacagactattgatgcagtatgacaccatcattattgatgaagcg
catgaacgcagcctgaatattgacttcttgctcggctatctgaaagagcttctgccgcgt
cgccccgatctgaaagtgattattacctctgcgaccatcgacccggaacgcttctcgcgc
cactttaataacgcgccgattatcgaagtctctggccgaacgtatcccgtagaggttcgt
tatcgccccatcgtggaagaggctgacgacactgaacgcgatcagctacaggcaattttc
gacgctgttgatgaactggggcgtgaaagtcccggcgatatcctgatttttatgagcgga
gagcgggaaatccgcgataccgccgaagccctgaacaagctgaacttacggcataccgaa
gtgttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgcgttttccagtcgcac
agcggacgccgtatcgtgctggcgactaacgtggcggaaacctcgctgacggtgccgggt
atcaagtatgtgatcgatcctggcactgcgcgcatcagccgctacagctaccgcactaaa
gtgcagcgcctgccgattgaaccgatctcacaggcttccgccaaccagcgtaaagggcgt
tgcggacgcgtatcggaagggatttgcattcgtctgtattcggaagatgactttttgtca
cgtccggaatttaccgacccggaaattctacgtaccaacctggcgtcggttattttgcag
atgaccgccctggggctgggtgacattgccgccttcccgtttgtcgaagcgccggataag
cgcaatattcaggatggcgtgcgtttgttggaagagctgggggcgattaccgccgacgaa
cagcaaacggcatataagctgacgccactgggccgacaattatcccagttgccggtcgac
ccgcgcctggcgcgtatggttctggaagcgcaaaaacatggctgtgtgcgcgaagcgatg
atcattacttccgcactctctattcaggatccgcgcgagcgcccagtggataagcagcag
gcttccgatgagaaacaccggcgcttccatgataaggagtccgattttctggcgtttgtt
aacctgtggaattacctcggcgagcaacaaaaggccctgtcgtcgaatcaattccgccgt
ctgtgtcgcaccgactatctgaactatttacgcgtgcgtgagtggcaggatatctatacc
caactgcgtcaggtggtaaaagaactggggattccggtaaacagcgaacccgcagagtac
cgggaaattcacgttgcgttgttaacgggactgttgtcgcatatcgggatgaaagatgcc
gataaacaagagtacaccggcgcgcgtaacgcccgattctctattttccccggttccggt
ttattcaaaaaaccgccgaaatggacaatggtcgcagaactggtggagaccagccgtttg
tgggggcgcatcgctgcccgcattgagccagaatgggtggaaccggtagcccagcacctg
attaaacgttcatatagcgaaccgcactgggagcgggcgcaaggcgcggtgatggcgacg
gaaaaggttactgtctacggtctgccgattgtcgccgcgcgcaaagtgaattacagccag
attgacccggcgttgtgtcgcgagttgttcatccgccatgcgctggtggagggggactgg
caaacccgtcatgccttcttccgtgagaatctaaaattgcgtgcggaagtcgaggaactt
gagcacaaatctcgccgccgcgatatcctggtggatgacgataccctgtttgagttttat
gaccagcgtattagccatgacgttatttccgcccgccactttgatagttggtggaaaaaa
atcagccgcgagacgccggatctgctcaactttgaaaaaagtatgctgattaaagaaggc
gcggaaaaaatcagcaaactggattacccgaatttctggcaccagggcaatctcaagctg
cgtttgagctatcagtttgaaccgggcgcggatgctgacggcgtgaccgtccatattccg
ttgccgctacttaaccaggttgacgagagcggttttgaatggcagatcccggggctgcgc
cgtgaattagttattgcgctgattaaatcgttgccaaaaccggtacgtcgcaactttgtt
ccggcgccaaactatgctgaagcgtttttaggtcgcgtaacgccgctggagctgccgctg
ctggacgctctggagcgtgaactgcgccggatgaccggcgtcacggtcgatcgggaagac
tggcattgggatcaggtgcccgagcatctgaaaatcacgtttcgcgtggtgaatgacaaa
aacaagaaactgcaggaagggcgttcgctcgccgagcttaaaaatgcgctgaaaggcaaa
gtgcaggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatc
tggagtttcggcgagctgccggaaagctacgaacagaaacgcggtaattataaagtgaag
gcgtggccggcgttagtggatgagcgtgacagcgtcgctatcaaattgtttgataatccg
ctggaacaacaacaggcgatgtggtgcggtttacgccgtctgctgttgctcaatattcct
tcaccgattaagtatctgcatgagaaattgccgaataaagccaagctggggctgtacttt
aacccgtacggcaaagtactggagttgattgatgactgtatcgcctgcggggtagataag
ctgatagatgccaacggcggaccggtgtggaacgaagcaggtttcaccgcgctgcacgaa
aaggtacgcgccgagctgaatgatactgtggtggatatcgcgaagcaggttgagcggatc
ctgacgaccgtattcaatatcaataagcgtctgaaagggcgggtggatatgagcatggcg
ttggggctttccgatatcaaggcgcagatgagcggtctggtataccgtggttttgtgact
ggcaacggctttaaacgtctcggcgatacgctgcgttatctgcaggcaattgaaaagcgg
ctggagaaactggctgtcgatccgcaccgcgatcgggcgcaaatgctgaaagtcgaaagc
gtccagcaggcgtggcaacaatggataaataaactgcctccagcgcgtcgcgaagatgat
gatgttaaagagatccgttggatgattgaagaactgcgtgtcagttatttcgcccaacag
ctcggtacgccttatcctatttccgataagcgtattttacaggccatggatcagattacg
gcctaa
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integrated database retrieval system
