Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67: SPUCDC_4046
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Entry
SPUCDC_4046 CDS
T02824
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sega
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
Brite
KEGG Orthology (KO) [BR:
sega00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sega03016
]
SPUCDC_4046
Enzymes [BR:
sega01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SPUCDC_4046
Transfer RNA biogenesis [BR:
sega03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SPUCDC_4046
Prokaryotic type
tRNA splicing ligases
SPUCDC_4046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGU66788
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All DBs
Position
4109359..4110576
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AA seq
405 aa
AA seq
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MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRD
VGAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKSIVLDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattgatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgat
gtgggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcac
ctgggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgatgattacctgaaagcggtacactgggcg
cagcaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaatcgatcgtcctcgatatggacgagatcaactgccaccataactat
gtgcaaaaagaacagcactttggcgaagagatttatgtgacgcgtaaaggagcggtttcg
gcgcggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagacatt
gatgcggtgatggcggcgcagtctgacctggtggaaatcatgtacaccctgcggcaggtg
gtgtgcgttaaaggatag
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