Secondary endosymbiont of Heteropsylla cubana: A35E_00305
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Entry
A35E_00305 CDS
T02336
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sehc
Secondary endosymbiont of Heteropsylla cubana
Pathway
sehc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sehc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A35E_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sehc03021
]
A35E_00305
03019 Messenger RNA biogenesis [BR:
sehc03019
]
A35E_00305
Transcription machinery [BR:
sehc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A35E_00305
Messenger RNA biogenesis [BR:
sehc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A35E_00305
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AFP85610
UniProt:
J3TYV6
LinkDB
All DBs
Position
559276..560535
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AA seq
419 aa
AA seq
DB search
MNLTELKNMPVSELVTLGENMGQENLARIRKQDIIFAILKQHAKSGEDIFGNGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMGRGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCLLIVLLIDERPEEVTEMQRLVKGEVITSTFDEPASRHI
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGDIDAMEFLMNKLAMSKTNDEFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaattaaaaaatatgccagtttcagagctagtgacccttggtgaaaat
atgggacaggaaaacctagcccgcatacgtaaacaagatattatctttgctatccttaaa
cagcatgctaagagtggcgaagatattttcggcaatggtgtactagaaatcttacaagac
ggatttggttttctccggtctagtgacagctcttaccttgctggtcctgatgatatctat
gtttcccctagccagattcgccgttttaatttacgtacaggtgatactatttctggtaag
attcgtcctccaaaagaaggcgagcgttactttgctttattaaaagttaatgaagtcaat
tatgataaaccagaaaatgcccgcaataagattttatttgaaaacctaacaccgctacat
gctaattcgcgtttgcgcatggggcgtggtaacggatctactgaagatcttactgcaaga
gtgttggatttagcttcaccaattggtcgcggacagcgtgggttgattgtagcgcctcca
aaagctggaaagactatgcttttgcaaaacatcgctcaaagtattgcctataatcatcca
gattgtttattaatagttctgttaattgatgagcgtccagaagaagtaactgaaatgcaa
cgcttggtaaagggggaggtaatcacctctacttttgatgagcctgcatctcgtcatatt
caagttgcagaaatggtaattgaaaaagcgaagcgtttagttgagcataagaaagatgtt
attattcttttggattcaattacacgtttggcgcgcgcctataatacagtagtacctgct
tctggtaaggtattaaccggtggtgtggatgctaacgctttacatcgtcctaagcgtttt
tttggagcagcacgaaacatggaagagggtggtagtttgacgattattgccacagcgctt
attgacacgggttctaagatggacgaagttatttacgaagaatttaaaggaacaggtaat
atggagcttcatttatcccgtaaaatagctgaaaaacgtgttttcccagcgattgattac
aacagatcaggaacccgaaaagaagaattgcttactacgcaagaagagctgcaaaaaatg
tggatattgcgtaaaattatccaccctatgggtgatattgatgcaatggaatttttaatg
aataaattagcaatgtctaaaactaatgatgaattcttcgaaatgatgaagcgttcataa
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