Secondary endosymbiont of Heteropsylla cubana: A35E_00320
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Entry
A35E_00320 CDS
T02336
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sehc
Secondary endosymbiont of Heteropsylla cubana
Pathway
sehc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sehc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A35E_00320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sehc03021
]
A35E_00320
03400 DNA repair and recombination proteins [BR:
sehc03400
]
A35E_00320
Enzymes [BR:
sehc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A35E_00320
Transcription machinery [BR:
sehc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A35E_00320
DNA repair and recombination proteins [BR:
sehc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A35E_00320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AFP85625
UniProt:
J3TYW7
LinkDB
All DBs
Position
complement(587238..591461)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKTKTQTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVESGMTKLEQRQILTEEQYLDALEEFGDEFNANM
GAEAIQTLLRNINLEQECEQLREELEETSSETKRKKLTKRIKLLDAFLLSGNKPEWMILT
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDSVNARGEGMVLTGPKEAERIYRAG
IAELHARVKVRITEYEKLNNTWIEKTYLVDTTVGRAILWMIVPKGLTFALVNETLGKKAI
SKMLNNCYRLLGLEPTVVFADQIMYTGFAYAARSGSSVGIDDMVIPMKKAEIIDEAETEV
AEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSTETVINSNGKEERQVSFNS
IFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVAQDLVITQDDCDTFSGILMTPLIEGGDVKEALRERVLG
RVTAENILKPGTDDILIKRNTLINEQWCDVLEKNSIDSVKARSVVTCDTDFGVCANCYGR
DLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLYLN
NAKFVINSSGKLVITSRNTELKLIDEYGRTKENYKIPYGAVMAKGNGVQVMGGDTVANWD
PHTMPVITEVDGFLRFTDMVDGQTITRQTDELTGLSSIVILDTAECTGSAKDLRPALRIV
DSHNNDVFLPGTDIPAQYFLPGKTIVQLEDGAKITAGDTLARLPQETSGIKDITGGLPRV
ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGNDVYEEMIPKWRQLNVFEG
ERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RKATITSSGKSEFLEGEQAEYSRIKIANRQLENDPKIKIHYVRDLLGITKASLATESFIS
AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERARYRQTDVSVFP
TPITADEASANLTELLNSDLGRSKNQE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttactaaagtttctgaaaacgaaaactcagaccgaagagtttgatgcgatt
aaaatcgcactggcttctccagacatgatccgttcttggtcatttggtgaagtaaaaaaa
ccagaaaccattaactatcgcacctttaaaccagaacgagatggtcttttctgtgcccgt
atttttggaccggtgaaagattacgaatgtctatgtggtaagtataaacgcttaaaacac
cgaggtgttatttgtgaaaaatgcggcgttgaggtaacacaaactaaagtacgccgcgaa
cgcatgggacatatcgaactagcgtctcctactgctcatatctggtttttaaaatcgctt
ccatctcgtatcggtctccttctcgatatgccattacgtgatattgaacgcgtattgtat
tttgaatcttatgttgttgttgaaagcggaatgactaaacttgaacaacgtcaaatttta
accgaagaacagtatctagatgcattagaggaatttggtgatgagtttaatgctaatatg
ggcgccgaagcaattcaaaccctcttaaggaacatcaacctagaacaagaatgcgaacag
ctacgagaagaattagaagaaaccagttcagaaacaaaacgtaaaaaattaacgaaaaga
attaaactattagatgctttcttactatccggaaataaaccagaatggatgattttaaca
gtattaccgatattaccaccagaccttcgacctctagtaccactagatggtggccgtttt
gcaacatcagatctcaacgacctgtatcgccgagtgatcaaccgtaataacaggttaaaa
cgtctgctagatctatctgcgccagatattatcgtacgaaatgaaaaacgaatgctacaa
gaagcagtcgatgcattgctagataacggtagacggggtcgtgccattaccggatccaat
aagcgtccattaaaatctcttgcggatatgattaaaggtaaacaaggacgatttcgccaa
aatttactaggtaaacgtgttgactactccggacgctctgtgatcaccgtaggtccatat
ttacatttacatcaatgcggcctaccaaagaaaatggcattagagttgtttaagcctttc
atttatggaaaattggagttacgaggtctagcaacaactattaaagcagctaagaaaatg
gttgagcgcgaagaagctgttgtatgggatattcttgacgaagttattcgagaacatcct
gttatgctaaatagagcaccaacgctacatcgtttaggaattcaagcttttgagccagta
ttaattgaaggtaaagcaattcagttacatcctctagtatgtgccgcttacaatgccgat
ttcgatggtgatcaaatggcggtccatgtcccattaacgctagaagctcagctagaagca
cgcgcactaatgatgtcgacaaacaatattttatcccccgctaacggagaaccaattatt
gttccatcccaagacgttgtattaggtctgtattatatgactcgtgacagcgtgaatgct
agaggagagggaatggtcttaaccggaccaaaagaagcagaacgtatttatcgggctggt
atagcggagctacatgcgcgcgttaaagtaagaattacagaatatgagaaacttaacaac
acatggatagaaaaaacctatctagttgatactacagttggccgagccattttatggatg
atagttcctaaaggactgacctttgcacttgtcaatgagacactaggtaaaaaagctatt
tcgaaaatgcttaataattgctatcgccttctcggtttagagccaactgtcgtcttcgct
gatcagattatgtatactggattcgcttatgcagcccgatccggttcctctgttggtatt
gatgacatggtcattccaatgaaaaaggcggaaattattgatgaagcagaaactgaagtt
gctgaaatccaagaacaatttcaatcaggtctagtcaccgcaggtgaacgttataataaa
gttattgatatctgggccgcagctaacgaacgtgtcgctaaagcgatgatggacaattta
tccaccgaaactgttattaacagtaatggaaaagaagagcgtcaagtctcttttaatagt
atctttatgatggctgattccggagcacgaggttcagcagcacagattcgccaactagct
ggtatgcgtggtctaatggcgaaacctgatggatcaatcatcgaaacgccaattacagca
aacttccgtgaagggttaaacgtacttcaatattttatctctacccatggtgctcgtaaa
ggtctagcggacaccgcactaaaaactgcaaattctggttacctaacacgtcgtctggtt
gacgttgcacaagatttggtcatcactcaagatgattgcgatactttttcaggtatctta
atgacacccctaattgaaggaggtgacgtaaaagaagcgctccgcgaacgggttttagga
cgcgtaactgcagaaaacatcctgaaaccaggaactgacgatattttaataaaacgcaat
actttgataaatgaacagtggtgtgatgtattagaaaaaaattctatcgatagtgtcaaa
gcccgatctgttgtaacatgcgatactgactttggagtgtgcgctaactgctatggacgc
gatttagcacgaggacacctggtcaataaaggtgaagctattggtgttattgctgcacaa
tctatcggtgaaccaggtacacagctaaccatgcgcacttttcatataggaggagctgca
tctcgcgcagcggcagaatccagcattcaggtaaaaaataaaggaactctatatcttaac
aatgctaaatttgtgatcaatagtagcggcaagcttgttattacttcacgtaatactgag
ttgaagttaattgacgaatacggacgtacaaaagaaaactataaaataccttatggtgcg
gtgatggccaaaggaaacggtgtacaagttatgggtggagatacagttgcaaactgggat
ccgcataccatgccagtaataactgaagttgatggattccttcgattcacggatatggtt
gatgggcaaactattactcgtcagacagatgaattaaccgggttatcatctattgttata
ctagatactgccgagtgtacaggtagcgctaaagatcttcgtccagcactacgcattgtt
gattctcataataatgatgtttttttacctggtactgatatacctgctcagtatttccta
cctggaaaaacaattgttcaactagaagatggcgctaaaataaccgctggtgacacactt
gctcgtcttccacaagaaaccagtggaatcaaagatatcacaggtggtttacctcgtgtt
gctgatctctttgaagcccgacgtcctaaagaacctgctattttagctgaaataagtggc
atcgtttcttttggtaaagaaactaaaggaaagcgtcgcttagtcatctctccattagac
ggtaacgacgtatatgaagaaatgatccctaaatggcgtcaacttaacgtatttgaagga
gaacgagtcgaacgaggagatgtaatttccgatggcccagaatctcctcatgatatttta
aggctacgaggcgtccatgcagttactcgttatatcgtcaatgaagttcaggatgtctac
cgtcttcaaggagtaaaaattaacgataaacatattgaagttattgttcgtcagatgcta
cgaaaagcaacaattactagtagcggaaaatctgaatttttagaaggtgaacaagctgaa
tattctcggataaagattgcaaatcgtcaattagaaaacgaccctaagataaaaatccac
tatgttcgtgatctacttggtattacaaaggcctctttagctacggaatcgtttatctct
gcggcatctttccaagaaaccactcgagtactaacagaagctgctgtggctggaaagcgc
gatgaattacgtggacttaaagaaaatgtaattgtaggacgcttaatcccagctggaact
ggctatgcctatcatcaagaacgagcacgttatcgtcaaaccgacgtttcagtatttcca
acaccaattactgctgatgaagcttctgctaaccttactgaactacttaattcggatcta
ggaagaagcaaaaatcaagaatga
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