Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_0817
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Entry
SPC_0817 CDS
T00862
Name
(GenBank) putative ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sei
Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPC_0817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sei03019
]
SPC_0817
Enzymes [BR:
sei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPC_0817
Messenger RNA biogenesis [BR:
sei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPC_0817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACN44990
UniProt:
C0PX08
LinkDB
All DBs
Position
862751..864217
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AA seq
488 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGRGQNQEGAGRRRRNQNRAQA
RGNPLATKHVRRVARAESRLPSKFYPATCPVARRLPGLRTMQIRRPDKVLAPSSGKIHIA
LRAAFQNR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctgggattaaaccctgatatcctgcgcgctattgccgagcagggt
taccgtgaacctacccctattcagcaacaggcgattcccgccgtgctggaaggccgcgat
ctgatggccagcgcccagaccggaaccggtaaaacggcgggttttaccctgccattgttg
cagcatctgattacccatcagccgcatgctaaaggtcgtcgcccggtgcgcgcgttgatc
ctcacgccaacccgcgagctggcggcgcaaattggcgaaaacgtcagagattacagtaaa
tatctcaacattcgctcgctggtggtatttggcggcgtaagcatcaatccgcagatgatg
aaactgcgcggcggcgtggatgtgctggtggcgacgccgggacgtctgctcgacctggaa
catcaaaatgccgtgaagctggatcagattgagattctggtactggatgaagccgaccgt
atgctggatatgggcttcattcacgacattcgtcgcgtgctggcgaaactgccggcgaag
cgtcagaatctgctgttctccgccacgttctccgacgacatcaaagcgctcgccgaaaag
ctgttgcgcaacccgctggaaatcgaagtggcgcgccgcaacacggcctcagagcaagtg
acgcagcacgtgcactttgtcgataaaaaacgcaaacgtgaactgttgtcgcagatgatt
ggccagggcaactggcagcaggtgttggtcttcacccgcaccaagcatggcgcgaaccat
ctggcggaacagcttaataaagacggtattcgcagcgcggcgatccacggtaataaatcg
cagggcgcacgtacccgcgcgctggccgattttaaatccggcgatattcgcgtgctggtg
gcgacggatattgcggcgcgtggtctggatattgaagagctgccgcacgtggtcaactat
gaactgccgaacgtgccggaagattatgtacaccgtattggccgtaccggtcgcgcggcg
gcaactggcgaggcgctgtcgctggtctgtgttgacgagcataaactgttgcgtgatatc
gaaaagttgctgaaaaaagagatcccacgcattacgacgccgggctatgagccggacccg
tcgattaaagcggagccgattcagaacggtcgtcagcagcgcggcggcggcggtcgtgga
cgcggacaaaatcaggagggagcggggcggcgaaggcgaaaccaaaaccgcgcacaggcg
aggggaaacccgctggcgacaaagcacgtccgccgcgtcgcccgcgcagaatcacgcctg
cccagtaaattttatccggcaacatgcccggtagcgcgacgcttaccgggcctacggact
atgcaaatacgtaggccggataaggtgcttgcaccgtcatccggcaaaatacacatcgcg
ttgcgagccgccttccagaaccggtaa
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