Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_1646
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Entry
SPC_1646 CDS
T00862
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sei
Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SPC_1646 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sei03400
]
SPC_1646 (sbcB)
Enzymes [BR:
sei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SPC_1646 (sbcB)
DNA repair and recombination proteins [BR:
sei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SPC_1646 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SPC_1646 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPC_1646 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACN45794
UniProt:
C0Q1K8
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All DBs
Position
complement(1726209..1727639)
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AA seq
476 aa
AA seq
DB search
MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP
QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN
FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSN
AHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAW
RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVK
LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAA
SDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL
DDAEQQRWLEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttaaaaacgacagcatacagagcacattcctcttccacgattacgaaaccttc
ggtacgcatccggccctcgacagacctgcgcaattcgccgcgctccgtacggataacgac
ttcaacgttattggcgagccggaggtgttttattgcaaacccgccgatgattatctaccg
cagcccggcgcggtgctgattaccggcatcacgccgcaggaagcgcgtgagaaaggagaa
aacgaagccgctttcgccagacgcattcatgcgctgtttaccgttcctaaaacctgcgtt
gtgggctacaacaatgtgcgctttgatgatgaagtcacgcgcaatattttttatcgcaac
ttttacgatccctatgcctggagctggcagcatgataattcacgttgggatctattggat
gtcatgcgcgcctgttatgcgctgcgcccggagggaattaactggccggaaaacgacgac
ggcctgcccagctttcgtctggaacatttaacccaggcgaacgggatcgaacacagcaac
gcgcatgatgcgatggcggatgtctacgccactattgcgatggcgcaactggtgaaaaca
cgccagccgcgactgtttgattatctttatagccaccgcagtaaacataaactggcggcg
ctgattgacgttccgcagatgaagccgctggtgcatgtctccggcatgtttggcgcgtgg
cgcggtaatacaagctgggtcgcgccgctggcgtggcatcctgaaaaccgtaacgcggtg
atcatggtcgatttagcaggcgatatttctcctcttcttgagctggacagcgacaccctt
cgcgagcggctttatacggccaaagccgatcttggcgatcacgtcgcagtgccggtaaag
ctggtgcatatcaataaatgtccggtactggcgcaggcgaataccttgcgcccggaggat
gccgaccggctgggaattaaccgccagcactgcctggataacctgaaagtgttgcgtgaa
aacccgcaggtccgcgacaaagtggtggcgattttcgccgaagccgaaccttttgccgcc
tcggataacgttgatgcccagctctatgatggttttttcagcgatgccgatcgcgcagcc
atgaaaatcgtactcgaaaccgagccgcgtaacctgcccgcgctggacattacctttgtc
gataagcgcattgagaagctactgtttaattaccgcgcacgcaattttcccggtacgctg
gatgacgcagagcagcagcgctggctggagcatcgccgtcaggtgctgacgccggagttt
ttacaacagtatgccaatgaattgcagatgctttctcagcagtatgcggaagataaaacg
aagctggggctgctgaaatcactgtggcagtacgcaaccgagattgtgtaa
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