Salmonella enterica subsp. enterica serovar Paratyphi C: SPC_4515
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Entry
SPC_4515 CDS
T00862
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sei
Salmonella enterica subsp. enterica serovar Paratyphi C
Pathway
sei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPC_4515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sei03019
]
SPC_4515 (rnr)
03016 Transfer RNA biogenesis [BR:
sei03016
]
SPC_4515 (rnr)
Enzymes [BR:
sei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPC_4515 (rnr)
Messenger RNA biogenesis [BR:
sei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPC_4515 (rnr)
Transfer RNA biogenesis [BR:
sei03016
]
Prokaryotic type
tRNA degradation factors
SPC_4515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ACN48566
UniProt:
C0Q6D6
LinkDB
All DBs
Position
4623088..4625526
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNADRRIERIEQAQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK
KDARKAKKPSAKTQKIAAATKAKRAAKKKAAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaattgaatattgaaggcgaagagcagcttgaagccttgcgtcgccgcctgcgc
gcgatggagcgcgacggacaactggtctttacccgccgccagtgctatgcgctgccggaa
cgcctcgacctgctgaaaggcaccgtgatcggtcatcgtgacggttacggtttcttacgt
gtcgaaggccgcaaagacgatctgtatctttccagcgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgccgatcgtaaaggtcgccgcgaagcgcgt
atcgtccgtgtactggtaccgaaaaccagtcagatagtcgggcgttatttcaccgatgcg
ggcgtcggctttgtagtgccggacgacagccgtctcagcttcgacattcttatcccgcca
gaagacgtcatgggcgcgcggatggggttcgtggtcgtggttgaactgacccaacgtcca
actcgccgtactaaagcggtagggaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggtatggcggttgatatggcgctgcgtacccatgaaataccttacatctggccgcaggcg
gtagagcagcaggtcgccgggctgaaagaagaggtgccggaagaggcgaaagtcggtcgt
gtcgatctgcgcgatttgccgctggtcactattgatggcgaagatgcccgtgactttgac
gacgcggtttactgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gacgtgagctattatgtacggccgccaacgccgctggatcgcgaggcgcgcaatcgcggc
acgtcggtttacttcccgtcacaggttgtcccaatgttgccggaggtgctctccaacggt
ctgtgttcgctaaacccgcaggttgacaggctgtgtatggtctgtgaaatgaccatctcg
gcgaaaggtcggctgaccggctacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggatctgcgtgaacaatat
gcgccgctggtgaagcatattgaagagctgcacaacctctacaaagtgctggataaagcg
cgtgaagagcgcggggggatctcgtttgagagcgaagaggcgaaatttatctttaatgcc
gatcgtcgcattgagcgtatcgaacaggcccagcgtaatgacgcgcataagcttatcgaa
gagtgcatgatcatggcgaatatctcggcggcgcgctttgtcgaaaaagctaaagagcca
gcgttattccgtattcatgataagcccaccaccgaagcgatcacctcattccgctccgta
ctggcggagctggggttggagctgccgggcggaaacaaaccggaaccgcgcgattatgcc
gaactgcttgaatcgattgccgaccggccggacgccgaaatgctgcaaactatgctgctg
cgttcaatgaagcaggcgatttacgatccggaaaaccgcgggcactttggcctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgctatccggatctttctttgcaccgc
gccattaagtacctgctggcgaaagagcaagggaacaagggcaacaccacagaaacgggc
ggttatcattactcgatggaagagatgttgcagctcggtcagcactgttcgatggcggaa
cgccgcgctgatgaagcgacgcgtgatgtctccgactggctgaaatgtgactttatgctg
gatcaggtaggcaacgtctttaagggcgtgattgccagcgtcaccggtttcggcttcttt
gtccgtcttgatgaactgtttatcgatgggctggtacacgtttcctcactggataacgat
tactatcgcttcgatcaggtagggcaacgtctgattggcgagtccggcgggcagacatat
cgcctgggcgaccgggtcgaggtacgcgtcgaagcggtgaatatggacgaacggaaaatt
gactttagcctgatctccagcgagcgcgcaccgcgtaacgtcggcaaaacggcgcgtgaa
aaagcgaaaaaaggtgaaagtaaaaacgccggtaaacgtcgtcaggtaggtaaaaaagtt
aacttcgagcctgatagcgccttccgcggcgagaaaaaagcgaagccgaaagcagcgaag
aaagacgcgagaaaagcaaaaaagccatcggctaaaacgcagaaaatagccgcagcgacc
aaagcgaagcgtgcggcgaagaaaaaagcggcagagtga
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