Slackia exigua: M1L65_04185
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Entry
M1L65_04185 CDS
T11352
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
seig Slackia exigua
Pathway
seig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1L65_04185 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seig03019
]
M1L65_04185 (pnp)
03016 Transfer RNA biogenesis [BR:
seig03016
]
M1L65_04185 (pnp)
Enzymes [BR:
seig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M1L65_04185 (pnp)
Messenger RNA biogenesis [BR:
seig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M1L65_04185 (pnp)
Transfer RNA biogenesis [BR:
seig03016
]
Prokaryotic type
tRNA degradation factors
M1L65_04185 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_2
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_NusA_2nd
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XQM00715
LinkDB
All DBs
Position
950489..952708
Genome browser
AA seq
739 aa
AA seq
DB search
MEKVSLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFPLTVD
FMEKMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDG
ENAPDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELTIA
GTKDYISMVEAGADQVGEEDMLAAMNFGQEAIAAFCEKQAEFLSMVDIQKREWPIHVPDA
SIAERVNAHYDAMSAVLKDADKQSRIAKVEELKASIKENDFSDEERAAWASDIAAACKAL
EKRAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLN
EAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPNEDE
FPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVILSD
IQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHILSAMLDE
IAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDGTVHIAAV
DQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISRMANGRVG
QVEDVLNLGDTVKVEVIEIDSKTGKVSLDRLEKPDAPASSGSGRPERSDREPRDRDRRPG
RSHREEASSGDSRKPRRRH
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
ttggagaaagtgtctttggaattcgaactgtacggcaagagctacgctttcgaaaccggc
gagcttgccaagcaggccaccggcgccgtgctggtacgtcaaggcgagaccacggtcctc
gtcacgagcgtcatctccaaagaagagaaggactacgatttcttccccctgacggtcgat
ttcatggagaagatgtacgcggtcggccgcatccctggcggctatctcaagcgtgaagga
cgcgcgtccgacaagggcacgctgaccgcgcgcatggtcgaccgtcccatccgccccggc
ttcgccgaaggtttcaagcaggaagtgcatgtcgtggcgacgacgttcgccatcgacggc
gagaacgcccccgactgcatgtgcgtcggcggcgcgtcggccgccctgctcatcgccagc
gccccgttcgacggcccggtcgcctgcgtgcgcatcgcgcgcaacgccgagacccgcgaa
ttcatcgtcaacccgacgtacgccgagcaggagacgtccgacctcgagctcacgatcgcc
ggcaccaaggattacatctccatggtcgaggcgggcgccgaccaggtcggcgaagaggat
atgctcgccgccatgaacttcggccaggaggctatcgcggcgttctgcgagaagcaggcc
gaattcctgtccatggtcgacatccagaagcgcgaatggcccatccacgtgcccgacgcc
tccatcgccgagcgcgtgaacgcccattacgacgccatgagcgccgtcctcaaggacgcc
gacaagcagtcgcgcatcgccaaggtcgaggagctcaaggcctccatcaaggagaacgac
ttctccgacgaggagcgcgccgcctgggcctccgacatcgccgccgcctgcaaggcgctt
gagaagcgcgcgatgcgccgcatgatcatcgaaaccggggaacgcgccgacgggcgcgcg
cccgaagagatccgcccgctctacatccgtccgggctacctgccccgcgtccacggctcc
ggcctgttccagcgcggccagacccaggtcatgtccgtcgcgaccctcggcctgctcaac
gaggcgcagcgtctcgacaccatcgatcctcagaccacgcgccgttatatgcaccagtac
aacttcccgccgtactgcaccggcgaggtcggccgcatgggcgcccccaagcgccgcgag
gtcggtcatggcgccctcgccgagcgcgccatccttcccgtccttccgaacgaggacgaa
ttcccgtattccatccgcgtcgtctccgaggtgctcgaatccaacggatcgtcctcgatg
gcgtccacctgcggctcctgcctcgcgctcatggatgcgggcgtacccatcaaggcgccc
gtctccggcgtggccatgggccttatcaaggaagacgacggcgtcgtcatcctctccgat
atccagggcctcgaggacttcctcggcgacatggacttcaaggtgaccggcacgcccgag
ggcatcaccgcgctccagatggacaacaaggcccgcggcctgtccaccgagatcctcggc
cgcgcgctcgcgcaggcgaaggaaggccgcgcgcacatcctgtccgccatgctcgatgaa
atcgccgctccgcgcgccgagcttcgcgacaccgcgccgcgtatcgagaccatcaagatc
ccggtcgagaagattcgcgaggtcatcggcaagggtggcgagaccattcgcggcatccag
gacgccaccggcgcctccatcgagatccaggaagacggcaccgtgcatatcgcggccgtc
gaccaggccgccggcgccgccgccatgcaggccgtcaaggacatcgtcaaggaacccgag
gtcggagaggtctatgaaggcacggtcgtgggcatccagtcgttcggcgcattcgtgaag
ctgacgccgaacaaggacggcctgcttcatatcagccgcatggccaacggacgcgtcggc
caggtcgaagacgtcctcaatctcggcgataccgtcaaagtcgaggtcatcgagatcgac
tccaagaccggcaaggtctccctcgaccgtctcgagaagcccgatgctccggcgtcttcc
ggctccggccgacccgagcgttccgaccgcgagcctcgcgatcgcgatcgtcgtcccggg
cgttcccatcgggaggaagcctcctcgggcgactcccgcaagccgcgccgtcgccactag
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