Slackia exigua: M1L65_06780
Help
Entry
M1L65_06780 CDS
T11352
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
seig Slackia exigua
Pathway
seig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1L65_06780 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seig03021
]
M1L65_06780 (rho)
03019 Messenger RNA biogenesis [BR:
seig03019
]
M1L65_06780 (rho)
Transcription machinery [BR:
seig03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M1L65_06780 (rho)
Messenger RNA biogenesis [BR:
seig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M1L65_06780 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
Rho_N
AAA_25
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
XQL99569
LinkDB
All DBs
Position
complement(1521942..1524119)
Genome browser
AA seq
725 aa
AA seq
DB search
MSQEELTSPEAAVSVSTGEEPGKRVRRTKKAEDSAASVVAAPQAPADEAPKRRRGRPRKV
AVDAAAAADAAPTTEAEPARARRARAKAPVVADAEAASAAETPADEAPKRRRGRPRKVRP
EETAPAPAVSAQAASEPARKEIPTPLAAAEPLPASAVAAVSDEDIQPREMRSRRRTRAPR
VIESGDAAIAPAKDASEAPSAPASGEGAERAGDSRDQRRSPRKERNREGRDSSFDRSDNR
PGRNDRFANDRAGNGRQRSSKNGHQFDRSDNRPGRNDRFTNDRHQRRGRNGQNQPMQPTF
SREDLAAMKVAELREKAAELEVAYLGLKKAELVEVVFEASKKADGIIEATGILDVMQDGY
GFLRVNDYLPGEHDVYVGAALIRRTGLRKGDLVKGQTRPTRPNDKYAALQNVETVNGTPV
DALGQRPRFGDLTPIFPNECLRMEHGRSTTTARVIDLVSPIGKGQRGLIVSPPKAGKTTI
LKDIAAAISANNPEVHLMCLLVDERPEEVTDMQRSIKGEVIASTFDMPTENHIVVSELVI
ERAKRLVENGEDVVVLLDSLTRLARAYNLAQPASGRILSGGVDSAALYPPKKFLGAARNI
EGGGSLTILASALVDTGSKMDEVIFEEFKGTGNMELKLDRSLADRRIFPAIDPVTSGTRK
EDLLLNPQEAPLIWAVRRILANMNNTERAMDMLIKSLRQTSNNQEFLIRTAKKAQTSRET
ENFEF
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagaagagctgacttcgcctgaagccgccgtttcggtttcgacgggcgaagag
cccggaaaacgcgttcgtcgcacgaagaaggccgaggattccgccgcaagcgtcgtggct
gctccgcaggcgcccgccgacgaggcgccgaagcgccgccgcggccgtccgcgcaaggtg
gcggtcgatgcggccgcagccgcggacgccgctcctacgaccgaggcggagccggcgcgc
gctcggcgtgccagggctaaggctccggtcgtcgccgatgccgaggccgcttcggctgcg
gaaacgcccgccgacgaagcaccgaagcgccgccgtggccgtccgcgcaaggtcaggccc
gaggaaactgctcctgcgcccgccgtatccgcgcaggccgcgtccgaacccgcacgcaag
gagatccccacgccgctcgcagcggcggagcctctgcctgcatcggctgtggccgccgta
tccgacgaggatatccagccccgcgagatgcgttcgcgccgtcgcacccgcgcgccgcgc
gtgatcgaaagcggagatgccgcgatcgctcccgccaaggacgcgtccgaagcgccgtcg
gcgccggcgagcggcgaaggcgccgagcgcgcaggcgattctcgcgaccagcgtcgttcc
ccgcgcaaggagcgcaatcgcgaaggccgcgactcctcgttcgaccgctccgacaaccgt
cccggccgcaacgaccgcttcgccaacgatcgggccggcaacggcaggcagcgttcgagc
aagaacggccatcagttcgaccgctccgacaaccgtcccggccgcaacgaccgcttcacc
aacgaccgtcaccaacgtcgcggccgcaacggccagaaccagccgatgcagccgaccttc
tcccgcgaagacctcgccgccatgaaggtggccgagctgcgcgagaaggccgccgagctc
gaggtcgcgtacctgggcctgaagaaggccgagctcgtcgaagtcgtgttcgaggcttcc
aagaaggccgacggcatcatcgaagccacgggcatcctcgacgtgatgcaggacggctac
ggctttttgcgcgtgaacgactatctgccgggcgagcacgacgtctacgtcggcgcggcg
ctcatccgccgcactgggctgcgcaagggcgacctggtcaaaggccagacgcgcccgacg
cgcccgaacgataagtacgcggcgctccaaaacgtcgagaccgtcaacggcacgcccgtc
gacgcgctcggccaacgtccgcgcttcggcgacctgacgcccatcttcccgaacgaatgc
ctgcgcatggaacacggacgttccaccaccacggcgcgcgtgatcgatctggtgtccccg
atcggcaagggccagcgcggtctgatcgtgtcgcccccgaaggccggcaagaccaccatc
ctgaaggatattgcggctgccatcagcgcgaacaatcctgaagtgcatcttatgtgcctg
ctcgtggacgaacgtcccgaagaagtcaccgacatgcagcgctccatcaagggcgaggtc
atcgcatcgaccttcgacatgccgaccgaaaaccacatcgtcgtctccgagctcgtcatc
gaacgcgcgaagcgtctggttgaaaacggcgaggacgtcgtggtcctgctcgacagcttg
acgcgcctcgcccgcgcatacaatctggcgcagccggcttcgggccgcatcctgtccggc
ggcgtcgattccgccgcgctctatccgccgaagaagtttctgggcgccgcgcgcaacatc
gagggcggcggaagcctgactatcctcgcatccgccctggtggacaccggatcgaagatg
gacgaggtcatcttcgaggaattcaagggcaccggcaacatggagctcaagctcgaccgc
agcctggccgaccgccgcatcttcccggccatcgacccggtcacgtcgggcacgcgcaag
gaggacctgctgctcaatcctcaggaggctccgctcatctgggcggtgcgccgcatcctt
gcgaacatgaacaacaccgagcgcgcgatggacatgctcatcaaatcgcttcgccagacc
agcaacaaccaggaattcctgatccgcaccgcgaagaaggcccagacttcgcgcgaaacg
gagaacttcgaattctga
DBGET
integrated database retrieval system
